Variant report

Variant	rs6856037
Chromosome Location	chr4:152083251-152083252
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10005764	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10016856	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10028324	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11099784	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17027541	1.00[EUR][1000 genomes]
rs17027575	1.00[EUR][1000 genomes]
rs28399915	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28401367	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28432996	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28493533	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28566074	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28594255	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28644282	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28658039	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28791569	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28836884	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58001315	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60001201	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60661732	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6812606	1.00[AMR][1000 genomes]
rs6820298	1.00[EUR][1000 genomes]
rs72967593	1.00[EUR][1000 genomes]
rs73859998	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73860000	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73861187	1.00[EUR][1000 genomes]
rs7658238	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7659047	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9917939	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9918061	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9991362	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9997354	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034948	chr4:151590115-152202687	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv537302	chr4:151590115-152202687	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv530159	chr4:151624865-152203910	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
4	nsv949002	chr4:151693149-152095109	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
5	nsv948719	chr4:151693149-152161625	Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
6	nsv880262	chr4:151712054-152519899	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
7	nsv595690	chr4:151788955-152109552	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
8	nsv1026416	chr4:151847403-152105879	Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
9	nsv881526	chr4:151968295-152489087	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
10	nsv1016220	chr4:151997139-152164126	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
11	nsv537306	chr4:151997139-152164126	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:152025200-152085400	Weak transcription	Hela-S3	cervix
2	chr4:152027000-152086600	Weak transcription	Fetal Kidney	kidney
3	chr4:152027200-152095600	Weak transcription	Pancreas	Pancrea
4	chr4:152043400-152095800	Weak transcription	Placenta	Placenta
5	chr4:152047400-152087800	Weak transcription	Psoas Muscle	Psoas
6	chr4:152050600-152087000	Weak transcription	HSMMtube	muscle
7	chr4:152051600-152087200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr4:152055000-152105800	Weak transcription	Small Intestine	intestine
9	chr4:152059200-152087000	Weak transcription	Fetal Heart	heart
10	chr4:152062200-152083800	Weak transcription	Brain Substantia Nigra	brain
11	chr4:152062200-152090000	Weak transcription	Brain Anterior Caudate	brain
12	chr4:152064200-152087400	Weak transcription	A549	lung
13	chr4:152065000-152091800	Weak transcription	HMEC	breast
14	chr4:152065400-152087800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr4:152065600-152089200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr4:152065800-152086600	Weak transcription	NHLF	lung
17	chr4:152065800-152086800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr4:152066000-152087000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr4:152066000-152095200	Weak transcription	Esophagus	oesophagus
20	chr4:152066200-152092600	Weak transcription	Colonic Mucosa	Colon
21	chr4:152066200-152095800	Weak transcription	Gastric	stomach
22	chr4:152066400-152095800	Weak transcription	Aorta	Aorta
23	chr4:152066600-152083800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr4:152066600-152083800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr4:152067000-152083600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr4:152067000-152083800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr4:152067000-152090000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr4:152068600-152083800	Weak transcription	NHEK	skin
29	chr4:152069200-152090000	Weak transcription	Brain Cingulate Gyrus	brain
30	chr4:152069400-152090000	Weak transcription	Fetal Muscle Trunk	muscle
31	chr4:152069600-152083800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr4:152069600-152083800	Weak transcription	Rectal Smooth Muscle	rectum
33	chr4:152069600-152086400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr4:152069600-152087800	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr4:152069600-152087800	Weak transcription	Right Ventricle	heart
36	chr4:152069600-152087800	Weak transcription	HSMM	muscle
37	chr4:152069600-152089200	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr4:152069800-152083400	Weak transcription	Fetal Muscle Leg	muscle
39	chr4:152069800-152085200	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr4:152069800-152087200	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr4:152070600-152083800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr4:152070800-152083400	Weak transcription	Left Ventricle	heart
43	chr4:152070800-152086600	Weak transcription	Osteobl	bone
44	chr4:152070800-152086800	Weak transcription	HUES48 Cell Line	embryonic stem cell
45	chr4:152070800-152089400	Weak transcription	Colon Smooth Muscle	Colon
46	chr4:152070800-152093800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
47	chr4:152071000-152085200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr4:152071000-152090000	Weak transcription	NH-A	brain
49	chr4:152074000-152088000	Strong transcription	Fetal Intestine Large	intestine
50	chr4:152074200-152085200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links