Variant report

Variant	rs17027760
Chromosome Location	chr4:99491560-99491561
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:99485403..99488335-chr4:99490236..99493906,4	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10005706	1.00[CEU][hapmap]
rs10007752	1.00[CEU][hapmap]
rs10029528	1.00[CEU][hapmap]
rs10030396	1.00[CEU][hapmap]
rs10031904	1.00[CEU][hapmap]
rs10032578	1.00[CEU][hapmap]
rs17027682	1.00[CEU][hapmap]
rs17027707	1.00[CEU][hapmap]
rs17027758	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17027826	1.00[CEU][hapmap]
rs17027841	1.00[CEU][hapmap]
rs17027845	1.00[CEU][hapmap]
rs28392914	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72902292	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754250	chr4:99094922-99527122	Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1004181	chr4:99208152-99529576	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv2760882	chr4:99460485-99521345	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99466800-99501600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr4:99479000-99506400	Weak transcription	Aorta	Aorta
3	chr4:99483200-99495800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr4:99483400-99498800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr4:99484200-99495400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr4:99485000-99501400	Weak transcription	HUVEC	blood vessel
7	chr4:99485400-99495000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr4:99487200-99500000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr4:99487400-99495000	Weak transcription	Primary T cells from cord blood	blood
10	chr4:99487600-99492200	Weak transcription	Primary hematopoietic stem cells	blood
11	chr4:99487800-99492200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr4:99487800-99498600	Weak transcription	NHLF	lung
13	chr4:99488000-99492000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr4:99488000-99492600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr4:99488000-99495200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr4:99488000-99495200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr4:99488000-99495400	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr4:99488000-99499000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr4:99488000-99499200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr4:99488200-99493800	Enhancers	Brain Inferior Temporal Lobe	brain
21	chr4:99488200-99494200	Enhancers	Brain Angular Gyrus	brain
22	chr4:99488200-99495200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr4:99488200-99495400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr4:99488200-99495400	Weak transcription	Stomach Smooth Muscle	stomach
25	chr4:99488200-99495800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr4:99488200-99500200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr4:99488400-99492800	Weak transcription	Rectal Smooth Muscle	rectum
28	chr4:99488400-99493000	Enhancers	Brain Hippocampus Middle	brain
29	chr4:99488400-99493600	Enhancers	Brain Cingulate Gyrus	brain
30	chr4:99488400-99493600	Weak transcription	Fetal Lung	lung
31	chr4:99488400-99495400	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr4:99488600-99493400	Weak transcription	Fetal Stomach	stomach
33	chr4:99489000-99498800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr4:99489600-99492800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
35	chr4:99489600-99493600	Enhancers	Brain Substantia Nigra	brain
36	chr4:99489800-99492000	Enhancers	Muscle Satellite Cultured Cells	--
37	chr4:99490000-99491600	Enhancers	Ovary	ovary
38	chr4:99490000-99492000	Enhancers	Osteobl	bone
39	chr4:99490000-99492600	Enhancers	Brain Anterior Caudate	brain
40	chr4:99490200-99493000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr4:99490200-99495000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr4:99490200-99499000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr4:99490400-99492000	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr4:99490400-99492600	Enhancers	Fetal Brain Female	brain
45	chr4:99490400-99493600	Weak transcription	Fetal Kidney	kidney
46	chr4:99490400-99499200	Weak transcription	Brain Germinal Matrix	brain
47	chr4:99490600-99492800	Weak transcription	Fetal Thymus	thymus
48	chr4:99490600-99495400	Weak transcription	Colon Smooth Muscle	Colon
49	chr4:99490600-99498600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr4:99490600-99498800	Weak transcription	Stomach Mucosa	stomach

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