Variant report

Variant	rs17027841
Chromosome Location	chr4:99526819-99526820
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:99520635..99523456-chr4:99526451..99529728,3	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10005706	1.00[CEU][hapmap]
rs10007752	1.00[CEU][hapmap]
rs10029528	1.00[CEU][hapmap]
rs10030396	1.00[CEU][hapmap]
rs10031904	1.00[CEU][hapmap]
rs10032578	1.00[CEU][hapmap]
rs17027682	1.00[CEU][hapmap]
rs17027707	1.00[CEU][hapmap]
rs17027758	1.00[CEU][hapmap]
rs17027760	1.00[CEU][hapmap]
rs17027826	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.80[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17027831	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17027835	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17027843	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17027844	0.84[YRI][hapmap];0.80[AFR][1000 genomes]
rs17027845	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17027853	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754250	chr4:99094922-99527122	Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1004181	chr4:99208152-99529576	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99522200-99532200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
2	chr4:99522400-99528800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
3	chr4:99523000-99527200	Enhancers	Osteobl	bone
4	chr4:99523000-99545000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr4:99523400-99528400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr4:99523600-99532200	Weak transcription	HMEC	breast
7	chr4:99523800-99527000	Weak transcription	Thymus	Thymus
8	chr4:99524000-99530400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr4:99524000-99535400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr4:99524400-99529400	Weak transcription	Primary T cells from cord blood	blood
11	chr4:99524600-99527200	Enhancers	NHLF	lung
12	chr4:99524600-99529800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr4:99524800-99527000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr4:99525000-99527000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr4:99525000-99527800	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr4:99525000-99528000	Weak transcription	Fetal Thymus	thymus
17	chr4:99525200-99530200	Enhancers	Fetal Heart	heart
18	chr4:99525400-99527000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr4:99525400-99527000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr4:99525400-99527000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr4:99525400-99529400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr4:99525400-99529600	Weak transcription	Primary T cells fromperipheralblood	blood
23	chr4:99525400-99530400	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr4:99525400-99531000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr4:99525400-99533200	Weak transcription	Fetal Lung	lung
26	chr4:99525600-99527000	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr4:99525600-99527000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr4:99525600-99527200	Enhancers	Brain Inferior Temporal Lobe	brain
29	chr4:99525600-99527400	Enhancers	NHDF-Ad	bronchial
30	chr4:99525600-99527600	Enhancers	Brain Germinal Matrix	brain
31	chr4:99525600-99528200	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr4:99525600-99528400	Enhancers	Cortex derived primary cultured neurospheres	brain
33	chr4:99525600-99529400	Weak transcription	Brain Angular Gyrus	brain
34	chr4:99525600-99529400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr4:99525800-99527000	Weak transcription	Fetal Brain Female	brain
36	chr4:99525800-99527200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr4:99525800-99527200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr4:99525800-99527400	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr4:99525800-99527600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
40	chr4:99525800-99527600	Enhancers	Brain Hippocampus Middle	brain
41	chr4:99525800-99528000	Enhancers	Brain Cingulate Gyrus	brain
42	chr4:99525800-99529400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr4:99525800-99529400	Weak transcription	Brain Substantia Nigra	brain
44	chr4:99525800-99529800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr4:99525800-99530000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr4:99525800-99530400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr4:99525800-99530600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr4:99525800-99530800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr4:99526000-99527200	Enhancers	NH-A	brain
50	chr4:99526000-99527800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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