Variant report

Variant	rs17027888
Chromosome Location	chr4:99571214-99571215
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:99566031..99568525-chr4:99568795..99571513,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11937758	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs59557534	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60793234	1.00[EUR][1000 genomes]
rs6821935	1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6837563	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9991427	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594940	chr4:99542475-99573350	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99548000-99577000	Weak transcription	Esophagus	oesophagus
2	chr4:99564000-99571600	Enhancers	Brain Inferior Temporal Lobe	brain
3	chr4:99564400-99575600	Weak transcription	Fetal Kidney	kidney
4	chr4:99565200-99571400	Weak transcription	Primary hematopoietic stem cells	blood
5	chr4:99565200-99571400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr4:99565200-99571400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr4:99566000-99575200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr4:99567600-99574200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr4:99567600-99574400	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr4:99567600-99574800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr4:99568200-99571600	Enhancers	Fetal Brain Female	brain
12	chr4:99568200-99571600	Enhancers	NHDF-Ad	bronchial
13	chr4:99568400-99575000	Weak transcription	Thymus	Thymus
14	chr4:99569600-99578200	Weak transcription	Aorta	Aorta
15	chr4:99569600-99578400	Weak transcription	Spleen	Spleen
16	chr4:99569800-99571600	Enhancers	Brain Cingulate Gyrus	brain
17	chr4:99570000-99576800	Weak transcription	Fetal Stomach	stomach
18	chr4:99570200-99571600	Enhancers	Osteobl	bone
19	chr4:99570200-99571800	Weak transcription	HMEC	breast
20	chr4:99570200-99573800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr4:99570200-99573800	Weak transcription	Fetal Brain Male	brain
22	chr4:99570200-99577000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr4:99570200-99577000	Weak transcription	Fetal Heart	heart
24	chr4:99570400-99571400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr4:99570400-99573800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr4:99570600-99572000	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr4:99570600-99572200	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr4:99570600-99573800	Weak transcription	Brain Hippocampus Middle	brain
29	chr4:99570800-99571400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr4:99570800-99571600	ZNF genes & repeats	NHLF	lung
31	chr4:99571000-99571400	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr4:99571000-99571800	Enhancers	Brain Angular Gyrus	brain
33	chr4:99571000-99573600	Weak transcription	NH-A	brain
34	chr4:99571000-99574200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr4:99571200-99571400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr4:99571200-99571400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr4:99571200-99571600	Weak transcription	HSMM	muscle
38	chr4:99571200-99572000	ZNF genes & repeats	HUVEC	blood vessel
39	chr4:99571200-99572200	ZNF genes & repeats	A549	lung
40	chr4:99571200-99572800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr4:99571200-99573600	Weak transcription	Brain Anterior Caudate	brain
42	chr4:99571200-99574000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr4:99571200-99574000	Weak transcription	Brain Substantia Nigra	brain
44	chr4:99571200-99574400	Weak transcription	Ovary	ovary

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