Variant report

Variant	rs6837563
Chromosome Location	chr4:99559351-99559352
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:75402989..75403657-chr4:99558827..99559504,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11937758	0.93[EUR][1000 genomes]
rs17027888	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59557534	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60793234	1.00[EUR][1000 genomes]
rs6821935	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9991427	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594940	chr4:99542475-99573350	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99546600-99560000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr4:99546800-99559800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr4:99548000-99560600	Weak transcription	Right Atrium	heart
4	chr4:99548000-99569200	Weak transcription	Gastric	stomach
5	chr4:99548000-99577000	Weak transcription	Esophagus	oesophagus
6	chr4:99548400-99563600	Weak transcription	HSMM	muscle
7	chr4:99549600-99563200	Weak transcription	HMEC	breast
8	chr4:99549800-99563600	Weak transcription	NHEK	skin
9	chr4:99550000-99563600	Weak transcription	HUVEC	blood vessel
10	chr4:99551800-99563200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr4:99552200-99559400	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr4:99552600-99569600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr4:99552800-99560000	Weak transcription	Thymus	Thymus
14	chr4:99552800-99560200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr4:99552800-99569200	Weak transcription	Fetal Stomach	stomach
16	chr4:99553000-99559400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr4:99553200-99559400	Weak transcription	NHLF	lung
18	chr4:99553200-99564200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr4:99553600-99560000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr4:99554000-99564000	Weak transcription	Osteobl	bone
21	chr4:99554200-99562600	Weak transcription	NH-A	brain
22	chr4:99554200-99564200	Weak transcription	Pancreas	Pancrea
23	chr4:99554200-99569200	Weak transcription	Spleen	Spleen
24	chr4:99554400-99564200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr4:99555000-99561600	Weak transcription	Fetal Brain Male	brain
26	chr4:99555800-99563200	Enhancers	Brain Cingulate Gyrus	brain
27	chr4:99556400-99559800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr4:99556600-99560000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr4:99556600-99560600	Enhancers	Brain Anterior Caudate	brain
30	chr4:99557600-99560800	Weak transcription	Fetal Brain Female	brain
31	chr4:99558000-99560600	Enhancers	Brain Hippocampus Middle	brain
32	chr4:99558000-99560800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr4:99558000-99561000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
34	chr4:99558000-99561800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
35	chr4:99558000-99562000	Enhancers	Brain Substantia Nigra	brain
36	chr4:99558000-99563600	Enhancers	Brain Angular Gyrus	brain
37	chr4:99558200-99559400	Weak transcription	Brain Germinal Matrix	brain
38	chr4:99558200-99560200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr4:99558200-99560600	Enhancers	Ovary	ovary
40	chr4:99558200-99563000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr4:99558200-99564200	Weak transcription	Fetal Heart	heart
42	chr4:99558400-99559800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
43	chr4:99558400-99563200	Weak transcription	Right Ventricle	heart
44	chr4:99559000-99560400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr4:99559200-99559600	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
46	chr4:99559200-99560000	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr4:99559200-99560200	Enhancers	Muscle Satellite Cultured Cells	--
48	chr4:99559200-99560400	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr4:99559200-99560600	Enhancers	Primary T cells fromperipheralblood	blood
50	chr4:99559200-99560600	Enhancers	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links