Variant report

Variant	rs17027889
Chromosome Location	chr4:99573992-99573993
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10856938	0.82[AMR][1000 genomes]
rs11947402	0.82[CEU][hapmap]
rs12507322	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs12509052	0.81[MEX][hapmap]
rs12512460	0.82[CEU][hapmap];0.86[EUR][1000 genomes]
rs12512621	1.00[CHB][hapmap];0.81[AMR][1000 genomes]
rs1881449	1.00[JPT][hapmap];0.85[AMR][1000 genomes]
rs4699359	1.00[CHB][hapmap];0.88[CHD][hapmap];0.89[MEX][hapmap];0.81[AMR][1000 genomes]
rs7660421	0.81[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv966532	chr4:99571460-99581225	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99548000-99577000	Weak transcription	Esophagus	oesophagus
2	chr4:99564400-99575600	Weak transcription	Fetal Kidney	kidney
3	chr4:99566000-99575200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr4:99567600-99574200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr4:99567600-99574400	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr4:99567600-99574800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr4:99568400-99575000	Weak transcription	Thymus	Thymus
8	chr4:99569600-99578200	Weak transcription	Aorta	Aorta
9	chr4:99569600-99578400	Weak transcription	Spleen	Spleen
10	chr4:99570000-99576800	Weak transcription	Fetal Stomach	stomach
11	chr4:99570200-99577000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr4:99570200-99577000	Weak transcription	Fetal Heart	heart
13	chr4:99571000-99574200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr4:99571200-99574000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr4:99571200-99574000	Weak transcription	Brain Substantia Nigra	brain
16	chr4:99571200-99574400	Weak transcription	Ovary	ovary
17	chr4:99571600-99574000	Weak transcription	Fetal Brain Female	brain
18	chr4:99571600-99574600	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr4:99571800-99574000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr4:99571800-99574000	Weak transcription	Brain Angular Gyrus	brain
21	chr4:99572400-99574000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr4:99572600-99578000	Weak transcription	Primary hematopoietic stem cells	blood
23	chr4:99572800-99574200	Weak transcription	Brain Cingulate Gyrus	brain
24	chr4:99573000-99575200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr4:99573200-99574000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr4:99573400-99574000	Enhancers	NHLF	lung
27	chr4:99573600-99574000	Enhancers	Osteobl	bone
28	chr4:99573600-99574400	Enhancers	NH-A	brain
29	chr4:99573600-99575200	Enhancers	HUVEC	blood vessel
30	chr4:99573600-99575600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr4:99573600-99576800	Enhancers	Brain Anterior Caudate	brain
32	chr4:99573800-99574200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr4:99573800-99574200	Flanking Active TSS	NHDF-Ad	bronchial
34	chr4:99573800-99574800	Enhancers	NHEK	skin
35	chr4:99573800-99575000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr4:99573800-99575000	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr4:99573800-99575000	Enhancers	Brain Hippocampus Middle	brain
38	chr4:99573800-99575000	Enhancers	HSMM	muscle
39	chr4:99573800-99575400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr4:99573800-99575800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr4:99573800-99575800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
42	chr4:99573800-99576600	Enhancers	Fetal Brain Male	brain
43	chr4:99573800-99576800	Enhancers	HMEC	breast
44	chr4:99573800-99577200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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