Variant report

Variant	rs11947402
Chromosome Location	chr4:99601941-99601942
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:99601736..99603582-chr4:99848681..99852365,4	K562	blood:

Variant related genes	Relation type
ENSG00000238449	Chromatin interaction
ENSG00000151247	Chromatin interaction
ENSG00000263923	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10516436	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11097628	0.94[ASN][1000 genomes]
rs11934932	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11942277	0.94[ASN][1000 genomes]
rs12500890	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12503008	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12503450	0.97[ASN][1000 genomes]
rs12508313	0.94[ASN][1000 genomes]
rs17027889	0.82[CEU][hapmap]
rs17027976	0.88[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1918742	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1918743	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2037797	0.94[ASN][1000 genomes]
rs2866020	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4128328	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4129894	0.85[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs4699360	1.00[ASN][1000 genomes]
rs4699665	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56095565	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59961429	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60066503	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61112015	0.94[ASN][1000 genomes]
rs7667862	0.94[ASN][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99594600-99606200	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr4:99596000-99604000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr4:99599200-99604000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr4:99600800-99602400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr4:99601000-99603800	Enhancers	K562	blood
6	chr4:99601000-99604800	Enhancers	HUVEC	blood vessel
7	chr4:99601200-99609600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr4:99601400-99602400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr4:99601400-99606200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr4:99601400-99606200	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr4:99601400-99606800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr4:99601600-99606200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr4:99601800-99602800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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