Variant report

Variant	rs1918742
Chromosome Location	chr4:99599166-99599167
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RAP1GDS1-3	chr4:99599126-99599713	XLOC_003615
2	lnc-RAP1GDS1-3	chr4:99599126-99599192	XLOC_003615
3	lnc-RAP1GDS1-3	chr4:99599126-99599748	XLOC_003615
4	lnc-RAP1GDS1-3	chr4:99599126-99599477	XLOC_003615
5	lnc-RAP1GDS1-3	chr4:99599125-99599477	NONHSAT097495

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10516436	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11097628	0.94[ASN][1000 genomes]
rs11934932	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11942277	0.94[ASN][1000 genomes]
rs11947402	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12500890	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12503008	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12503450	0.97[ASN][1000 genomes]
rs12508313	0.94[ASN][1000 genomes]
rs17027889	0.82[CEU][hapmap]
rs17027976	0.88[CHB][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.94[ASN][1000 genomes]
rs1918743	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2037797	0.94[ASN][1000 genomes]
rs2866020	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4128328	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4129894	0.85[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs4699360	1.00[ASN][1000 genomes]
rs4699665	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56095565	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59961429	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60066503	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61112015	0.94[ASN][1000 genomes]
rs7667862	0.94[ASN][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99594600-99601000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr4:99594600-99606200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr4:99594800-99601000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr4:99596000-99601000	Weak transcription	K562	blood
5	chr4:99596000-99604000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr4:99598800-99599200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr4:99599000-99599400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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