Variant report

Variant	rs17028323
Chromosome Location	chr4:99883093-99883094
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17028328	1.00[AFR][1000 genomes]
rs17028338	0.91[AFR][1000 genomes]
rs17028347	0.89[AFR][1000 genomes]
rs6846054	0.80[AFR][1000 genomes]
rs72906974	0.80[AFR][1000 genomes]
rs72906977	0.80[AFR][1000 genomes]
rs72906984	0.80[AFR][1000 genomes]
rs72906987	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009017	chr4:99669441-100406394	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99882600-99883400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr4:99883000-99883600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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