Variant report

Variant	rs72906977
Chromosome Location	chr4:99871567-99871568
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs17028323	0.80[AFR][1000 genomes]
rs17028328	0.80[AFR][1000 genomes]
rs17028338	0.80[AFR][1000 genomes]
rs17028347	0.82[AFR][1000 genomes]
rs6833875	0.95[AFR][1000 genomes]
rs6836070	0.82[AFR][1000 genomes]
rs6846054	1.00[AFR][1000 genomes]
rs72893532	0.95[AFR][1000 genomes]
rs72893536	0.95[AFR][1000 genomes]
rs72893542	0.95[AFR][1000 genomes]
rs72893550	0.95[AFR][1000 genomes]
rs72893554	0.95[AFR][1000 genomes]
rs72893558	0.95[AFR][1000 genomes]
rs72905040	0.95[AFR][1000 genomes]
rs72905051	0.95[AFR][1000 genomes]
rs72905078	0.95[AFR][1000 genomes]
rs72905084	0.95[AFR][1000 genomes]
rs72906974	1.00[AFR][1000 genomes]
rs72906984	1.00[AFR][1000 genomes]
rs72906987	1.00[AFR][1000 genomes]
rs72909404	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009017	chr4:99669441-100406394	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	nsv879654	chr4:99748988-99877402	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99867600-99872000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr4:99867800-99872000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:99868000-99872200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr4:99870200-99872200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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