Variant report
| Variant | rs72909404 |
|---|---|
| Chromosome Location | chr4:99761980-99761981 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:99760356..99762924-chr4:99848603..99851225,4 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000151247 | Chromatin interaction |
| ENSG00000263923 | Chromatin interaction |
| ENSG00000238449 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs6833875 | 0.86[AFR][1000 genomes] |
| rs6846054 | 0.82[AFR][1000 genomes] |
| rs72893532 | 0.86[AFR][1000 genomes] |
| rs72893536 | 0.86[AFR][1000 genomes] |
| rs72893542 | 0.86[AFR][1000 genomes] |
| rs72893550 | 0.86[AFR][1000 genomes] |
| rs72893554 | 0.86[AFR][1000 genomes] |
| rs72893558 | 0.86[AFR][1000 genomes] |
| rs72905040 | 0.86[AFR][1000 genomes] |
| rs72905051 | 0.86[AFR][1000 genomes] |
| rs72905078 | 0.86[AFR][1000 genomes] |
| rs72905084 | 0.86[AFR][1000 genomes] |
| rs72906974 | 0.82[AFR][1000 genomes] |
| rs72906977 | 0.82[AFR][1000 genomes] |
| rs72906984 | 0.82[AFR][1000 genomes] |
| rs72906987 | 0.82[AFR][1000 genomes] |
| rs72909452 | 1.00[AMR][1000 genomes] |
| rs72909467 | 1.00[AMR][1000 genomes] |
| rs7669447 | 1.00[AMR][1000 genomes] |
| rs7672509 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1009017 | chr4:99669441-100406394 | Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 57 gene(s) | inside rSNPs | diseases |
| 2 | nsv879654 | chr4:99748988-99877402 | Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 31 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
