Variant report

Variant	rs7672509
Chromosome Location	chr4:99784061-99784062
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10010015	1.00[MEX][hapmap]
rs17028328	0.82[ASW][hapmap]
rs17028338	0.82[ASW][hapmap]
rs17028473	1.00[AMR][1000 genomes]
rs28730610	1.00[AMR][1000 genomes]
rs29001631	1.00[AMR][1000 genomes]
rs6833875	0.82[AFR][1000 genomes]
rs72893508	1.00[AFR][1000 genomes]
rs72893532	0.82[AFR][1000 genomes]
rs72893536	0.82[AFR][1000 genomes]
rs72893542	0.82[AFR][1000 genomes]
rs72893550	0.82[AFR][1000 genomes]
rs72893554	0.82[AFR][1000 genomes]
rs72893558	0.82[AFR][1000 genomes]
rs72905040	0.82[AFR][1000 genomes]
rs72905051	0.82[AFR][1000 genomes]
rs72905078	0.82[AFR][1000 genomes]
rs72905084	0.82[AFR][1000 genomes]
rs72909404	1.00[AMR][1000 genomes]
rs72909452	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72909467	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7664906	1.00[AMR][1000 genomes]
rs7669447	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009017	chr4:99669441-100406394	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	nsv879654	chr4:99748988-99877402	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv879655	chr4:99783733-99843113	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99783600-99785800	Weak transcription	Stomach Mucosa	stomach
2	chr4:99784000-99785200	Weak transcription	K562	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links