Variant report

Variant	rs17028449
Chromosome Location	chr4:152956580-152956581
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10033529	0.93[ASN][1000 genomes]
rs10033840	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13435686	0.86[ASN][1000 genomes]
rs28574816	1.00[ASN][1000 genomes]
rs28868301	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6858417	0.96[ASN][1000 genomes]
rs72968646	0.96[ASN][1000 genomes]
rs72968650	0.96[ASN][1000 genomes]
rs72968655	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432644	chr4:152635395-153023402	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv880341	chr4:152861685-153110256	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv931416	chr4:152877808-153440553	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv461679	chr4:152935555-152992741	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv595734	chr4:152935555-152992741	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:152952000-152959000	Weak transcription	Aorta	Aorta
2	chr4:152954400-152958800	Weak transcription	HSMMtube	muscle
3	chr4:152954600-152957400	Weak transcription	NHLF	lung
4	chr4:152954600-152958000	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr4:152954600-152959000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr4:152955000-152957200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr4:152955000-152957200	Weak transcription	Fetal Heart	heart
8	chr4:152955000-152958000	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr4:152955000-152959000	Weak transcription	Right Atrium	heart
10	chr4:152955000-152959000	Weak transcription	Stomach Smooth Muscle	stomach
11	chr4:152955200-152957200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr4:152955200-152957600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr4:152955200-152960600	Weak transcription	Left Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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