Variant report

Variant	rs28868301
Chromosome Location	chr4:152964394-152964395
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10033529	0.93[ASN][1000 genomes]
rs10033840	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13435686	0.86[ASN][1000 genomes]
rs17028449	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28574816	1.00[ASN][1000 genomes]
rs6858417	0.96[ASN][1000 genomes]
rs72968646	0.96[ASN][1000 genomes]
rs72968650	0.96[ASN][1000 genomes]
rs72968655	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432644	chr4:152635395-153023402	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv880341	chr4:152861685-153110256	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv931416	chr4:152877808-153440553	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv461679	chr4:152935555-152992741	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv595734	chr4:152935555-152992741	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:152959600-152965600	Weak transcription	Hela-S3	cervix
2	chr4:152960600-152966800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr4:152960800-152965200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr4:152961000-152966600	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr4:152961400-152966600	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr4:152961400-152967200	Weak transcription	Aorta	Aorta
7	chr4:152962400-152966600	Weak transcription	Fetal Heart	heart
8	chr4:152962800-152965800	Weak transcription	Primary B cells from peripheral blood	blood
9	chr4:152963000-152966200	Weak transcription	Primary B cells from cord blood	blood
10	chr4:152963200-152965200	Weak transcription	Fetal Thymus	thymus
11	chr4:152963200-152965400	Weak transcription	Thymus	Thymus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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