Variant report

Variant	rs17031631
Chromosome Location	chr3:60727082-60727083
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17063886	0.85[YRI][hapmap]
rs1716744	0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529602	chr3:60088353-60830769	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv998815	chr3:60495872-60830769	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv999828	chr3:60537384-60785274	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60724400-60728800	Weak transcription	HepG2	liver
2	chr3:60725200-60737200	Weak transcription	Pancreas	Pancrea
3	chr3:60725800-60730200	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr3:60726000-60727200	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr3:60726000-60727400	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr3:60726400-60727400	Enhancers	H1 Cell Line	embryonic stem cell
7	chr3:60726800-60728600	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
8	chr3:60727000-60727400	Enhancers	H9 Cell Line	embryonic stem cell
9	chr3:60727000-60730400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr3:60727000-60730600	Enhancers	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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