Variant report

Variant	rs17033785
Chromosome Location	chr2:67791520-67791521
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:67789891..67792734-chr2:67796111..67797730,2	MCF-7	breast:
2	chr2:67788501..67790772-chr2:67790887..67793691,3	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ETAA1-4	chr2:67791428-67791597	XLOC_001515

Variant related genes	Relation type
ENSG00000224173	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1009280	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12470866	0.90[ASN][1000 genomes]
rs12623402	0.84[ASN][1000 genomes]
rs17033783	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17033788	0.81[JPT][hapmap]
rs17033814	0.97[ASN][1000 genomes]
rs17033893	0.90[ASN][1000 genomes]
rs17033929	0.90[ASN][1000 genomes]
rs17033967	0.81[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs17033981	0.89[ASN][1000 genomes]
rs2861642	0.97[ASN][1000 genomes]
rs41407847	0.93[ASN][1000 genomes]
rs4671186	1.00[ASW][hapmap]
rs4671191	0.90[ASN][1000 genomes]
rs4671814	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534389	chr2:67388428-68225338	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67786400-67793600	Enhancers	Hela-S3	cervix
2	chr2:67788800-67791600	Weak transcription	Left Ventricle	heart
3	chr2:67788800-67792800	Enhancers	Muscle Satellite Cultured Cells	--
4	chr2:67789200-67791600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr2:67789200-67791600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr2:67789200-67791600	Weak transcription	HSMMtube	muscle
7	chr2:67789200-67792600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr2:67789200-67793000	Weak transcription	Fetal Stomach	stomach
9	chr2:67789400-67795000	Weak transcription	Fetal Lung	lung
10	chr2:67789800-67792600	Weak transcription	HUVEC	blood vessel
11	chr2:67789800-67795800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr2:67790200-67791600	Weak transcription	Stomach Mucosa	stomach
13	chr2:67790400-67794800	Enhancers	HSMM	muscle
14	chr2:67790400-67798600	Weak transcription	Pancreas	Pancrea
15	chr2:67790800-67793600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr2:67790800-67793800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr2:67790800-67794400	Enhancers	NHLF	lung
18	chr2:67790800-67795000	Enhancers	NHDF-Ad	bronchial
19	chr2:67790800-67795600	Enhancers	Osteobl	bone
20	chr2:67791200-67791800	Enhancers	A549	lung
21	chr2:67791400-67791600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr2:67791400-67791600	Weak transcription	Fetal Heart	heart
23	chr2:67791400-67791800	Enhancers	NH-A	brain
24	chr2:67791400-67792200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr2:67791400-67792200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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