Variant report

Variant	rs2861642
Chromosome Location	chr2:67797767-67797768
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12470866	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12623402	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs17033783	0.96[ASN][1000 genomes]
rs17033785	0.97[ASN][1000 genomes]
rs17033814	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17033893	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17033929	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17033967	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17033981	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs41407847	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4671191	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4671814	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534389	chr2:67388428-68225338	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
2	nsv962033	chr2:67794826-67798059	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67790400-67798600	Weak transcription	Pancreas	Pancrea
2	chr2:67793600-67799400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr2:67793800-67799600	Weak transcription	Psoas Muscle	Psoas
4	chr2:67793800-67800400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr2:67793800-67803000	Weak transcription	Fetal Stomach	stomach
6	chr2:67794400-67798200	Weak transcription	Stomach Mucosa	stomach
7	chr2:67794400-67798600	Weak transcription	Left Ventricle	heart
8	chr2:67794400-67798600	Weak transcription	NHLF	lung
9	chr2:67794600-67799000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr2:67794600-67799400	Weak transcription	HSMMtube	muscle
11	chr2:67794800-67799400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr2:67795400-67798600	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr2:67795400-67799600	Weak transcription	NH-A	brain
14	chr2:67795600-67797800	Weak transcription	A549	lung
15	chr2:67795600-67799800	Weak transcription	Osteobl	bone
16	chr2:67795600-67802800	Weak transcription	Fetal Lung	lung
17	chr2:67795800-67798200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr2:67796200-67798000	Weak transcription	Hela-S3	cervix

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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