Variant report

Variant	rs17033861
Chromosome Location	chr2:67828078-67828079
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10172154	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10174552	0.81[AFR][1000 genomes]
rs10191798	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13398112	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28838983	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2902021	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2902026	0.94[JPT][hapmap]
rs6546324	0.94[JPT][hapmap]
rs7420308	0.80[AFR][1000 genomes]
rs7423926	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534389	chr2:67388428-68225338	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs17033861	ADD2	cis	cerebellum	SCAN
rs17033861	ETAA1	cis	cerebellum	SCAN
rs17033861	NAGK	cis	parietal	SCAN
rs17033861	FAM136A	cis	cerebellum	SCAN

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67813600-67828800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:67826200-67828400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr2:67826200-67828400	Enhancers	Osteobl	bone
4	chr2:67826200-67828600	Enhancers	Muscle Satellite Cultured Cells	--
5	chr2:67826200-67829000	Enhancers	HMEC	breast
6	chr2:67826400-67828400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr2:67826400-67829000	Enhancers	NHDF-Ad	bronchial
8	chr2:67827000-67828400	Enhancers	Hela-S3	cervix
9	chr2:67827000-67831000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr2:67827200-67828200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr2:67827200-67828600	Enhancers	NHLF	lung
12	chr2:67827200-67831000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr2:67827400-67828400	Enhancers	NH-A	brain
14	chr2:67827600-67828600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr2:67827800-67828200	Weak transcription	HSMMtube	muscle
16	chr2:67827800-67828600	Enhancers	HUVEC	blood vessel
17	chr2:67828000-67839400	Weak transcription	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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