Variant report

Variant	rs6546324
Chromosome Location	chr2:67856490-67856491
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:67624303..67625839-chr2:67853938..67856689,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000143971	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10174552	0.90[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs10182699	0.86[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs10207177	0.85[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs1023692	0.97[ASN][1000 genomes]
rs10490726	0.90[ASN][1000 genomes]
rs11126143	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12105010	0.98[ASN][1000 genomes]
rs12465584	0.93[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs12468607	0.89[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs12473649	0.93[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs13387688	0.98[ASN][1000 genomes]
rs1430787	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1430788	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1549783	0.96[ASN][1000 genomes]
rs17033869	0.89[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs17033883	0.85[ASN][1000 genomes]
rs17033913	0.93[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs17033915	0.93[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs17033919	0.93[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs17034031	0.98[ASN][1000 genomes]
rs2270349	0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs28535096	0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2861647	0.85[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs2861694	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2902026	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4141819	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4365448	0.93[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs4567918	0.93[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs4619594	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58817440	0.93[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs60984428	0.85[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs62156281	0.88[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs62156324	0.93[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs62156326	0.91[ASN][1000 genomes]
rs62156327	0.93[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs6706021	0.86[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs6708126	0.95[AFR][1000 genomes]
rs72903715	0.93[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs72903729	0.93[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs7420308	0.89[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs7423926	0.90[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7586016	0.88[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7592937	0.86[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7607299	0.86[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs9309401	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534389	chr2:67388428-68225338	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67854600-67860000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr2:67854600-67860200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr2:67856200-67857200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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