Variant report

Variant	rs2861694
Chromosome Location	chr2:67845739-67845740
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10174552	0.91[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs10182699	0.87[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs10207177	0.86[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs1023692	0.84[ASN][1000 genomes]
rs11126143	0.80[EUR][1000 genomes]
rs12105010	0.85[ASN][1000 genomes]
rs12465584	0.94[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs12468607	0.90[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs12473649	0.94[AFR][1000 genomes]
rs13387688	0.85[ASN][1000 genomes]
rs1430787	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1430788	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1549783	0.83[ASN][1000 genomes]
rs17033869	0.90[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs17033883	0.92[ASN][1000 genomes]
rs17033913	0.94[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs17033915	0.94[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs17033919	0.94[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs17034031	0.85[ASN][1000 genomes]
rs2270349	0.85[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs28535096	0.85[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs2861647	0.86[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs2902026	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4141819	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4365448	0.94[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs4567918	0.94[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs4619594	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs58817440	0.94[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs60984428	0.86[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs62156281	0.89[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs62156324	0.94[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs62156327	0.94[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs6546324	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6706021	0.87[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs6708126	0.91[AFR][1000 genomes]
rs72903715	0.94[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs72903729	0.94[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs7420308	0.90[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs7423926	0.91[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs7586016	0.89[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs7592937	0.87[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs7607299	0.87[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs9309401	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534389	chr2:67388428-68225338	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67840200-67847800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:67844600-67846600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr2:67844600-67849400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr2:67845600-67849000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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