Variant report

Variant	rs4619594
Chromosome Location	chr2:67868480-67868481
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:67862533..67864261-chr2:67868107..67870429,2	K562	blood:
2	chr2:67866969..67869436-chr2:67874841..67877617,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10174552	0.86[ASN][1000 genomes]
rs10182699	0.86[ASN][1000 genomes]
rs10207177	0.86[ASN][1000 genomes]
rs1023692	0.92[ASN][1000 genomes]
rs10490726	0.85[ASN][1000 genomes]
rs11126143	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12105010	0.88[ASN][1000 genomes]
rs12465584	0.86[ASN][1000 genomes]
rs13387688	0.88[ASN][1000 genomes]
rs1430787	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1430788	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1549783	0.90[ASN][1000 genomes]
rs17034031	0.88[ASN][1000 genomes]
rs2270349	0.86[ASN][1000 genomes]
rs28535096	0.85[ASN][1000 genomes]
rs2861647	0.86[ASN][1000 genomes]
rs2861694	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2902026	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4141819	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4365448	0.86[ASN][1000 genomes]
rs4567918	0.86[ASN][1000 genomes]
rs58817440	0.86[ASN][1000 genomes]
rs60984428	0.86[ASN][1000 genomes]
rs62156281	0.86[ASN][1000 genomes]
rs62156324	0.86[ASN][1000 genomes]
rs62156326	0.81[ASN][1000 genomes]
rs62156327	0.86[ASN][1000 genomes]
rs6546324	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6706021	0.86[ASN][1000 genomes]
rs72903715	0.85[ASN][1000 genomes]
rs7420308	0.81[ASN][1000 genomes]
rs7423926	0.86[ASN][1000 genomes]
rs7586016	0.86[ASN][1000 genomes]
rs7592937	0.86[ASN][1000 genomes]
rs7607299	0.86[ASN][1000 genomes]
rs9309401	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534389	chr2:67388428-68225338	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67866800-67884200	Weak transcription	Aorta	Aorta
2	chr2:67867200-67872400	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr2:67867200-67872600	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr2:67867600-67868600	Enhancers	Hela-S3	cervix

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