Variant report

Variant	rs17033960
Chromosome Location	chr2:67853621-67853622
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10490724	0.88[AFR][1000 genomes]
rs17033882	0.87[AFR][1000 genomes]
rs17033980	0.82[AFR][1000 genomes]
rs17033986	0.97[AFR][1000 genomes]
rs4591326	1.00[YRI][hapmap]
rs6732129	1.00[AFR][1000 genomes]
rs6755436	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534389	chr2:67388428-68225338	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67852200-67854400	Enhancers	Muscle Satellite Cultured Cells	--
2	chr2:67852400-67853800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr2:67852400-67854200	Enhancers	HMEC	breast
4	chr2:67852400-67854600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr2:67852400-67854600	Enhancers	NHDF-Ad	bronchial
6	chr2:67852400-67855000	Enhancers	HSMM	muscle
7	chr2:67852600-67853800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr2:67853000-67853800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr2:67853000-67853800	Enhancers	Fetal Muscle Leg	muscle
10	chr2:67853000-67854600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr2:67853200-67854000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr2:67853200-67854600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr2:67853400-67854000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr2:67853400-67854600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr2:67853400-67855000	Weak transcription	Fetal Stomach	stomach
16	chr2:67853400-67855000	Enhancers	HSMMtube	muscle
17	chr2:67853600-67854400	Enhancers	NH-A	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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