Variant report

Variant	rs6732129
Chromosome Location	chr2:67830450-67830451
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10490724	0.88[AFR][1000 genomes]
rs17033882	0.87[AFR][1000 genomes]
rs17033960	1.00[AFR][1000 genomes]
rs17033980	0.82[AFR][1000 genomes]
rs17033986	0.97[AFR][1000 genomes]
rs4591326	1.00[YRI][hapmap]
rs6755436	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534389	chr2:67388428-68225338	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67827000-67831000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr2:67827200-67831000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr2:67828000-67839400	Weak transcription	Placenta	Placenta
4	chr2:67828400-67831000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr2:67828400-67831200	Weak transcription	HSMMtube	muscle
6	chr2:67829000-67830800	Weak transcription	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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