Variant report
| Variant | rs17034113 |
|---|---|
| Chromosome Location | chr2:67913511-67913512 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:6)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:6 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | EP300 | chr2:67913317-67913822 | SK-N-SH_RA | brain: | n/a | n/a |
| 2 | RAD21 | chr2:67913411-67913686 | SK-N-SH_RA | brain: | n/a | n/a |
| 3 | EP300 | chr2:67913244-67913851 | SK-N-SH_RA | brain: | n/a | n/a |
| 4 | GATA3 | chr2:67913429-67913734 | SH-SY5Y | brain: | n/a | n/a |
| 5 | EP300 | chr2:67912867-67914284 | SK-N-SH | brain: | n/a | n/a |
| 6 | GATA2 | chr2:67913339-67913801 | SH-SY5Y | brain: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000235495 | TF binding region |
rSNPs within LD-proxies of this variant (count:13)
| rs_ID | r2[population] |
|---|---|
| rs17034108 | 1.00[YRI][hapmap];0.90[AFR][1000 genomes] |
| rs17034122 | 1.00[YRI][hapmap] |
| rs17040168 | 0.90[AFR][1000 genomes] |
| rs56206315 | 1.00[ASN][1000 genomes] |
| rs56220757 | 1.00[ASN][1000 genomes] |
| rs56335904 | 1.00[ASN][1000 genomes] |
| rs58641922 | 1.00[ASN][1000 genomes] |
| rs58847083 | 1.00[ASN][1000 genomes] |
| rs60939105 | 1.00[ASN][1000 genomes] |
| rs61230444 | 1.00[ASN][1000 genomes] |
| rs73936556 | 1.00[ASN][1000 genomes] |
| rs73936557 | 1.00[ASN][1000 genomes] |
| rs73936560 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv534389 | chr2:67388428-68225338 | Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 36 gene(s) | inside rSNPs | diseases |
| 2 | nsv1007345 | chr2:67870225-67980094 | Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Weak transcription Genic enhancers Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv834250 | chr2:67897722-68051532 | Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
