Variant report

Variant	rs73936557
Chromosome Location	chr2:67877159-67877160
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:67866969..67869436-chr2:67874841..67877617,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C1D-7	chr2:67876690-67877234	NONHSAT071302

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs17034085	0.84[AFR][1000 genomes]
rs17034113	1.00[ASN][1000 genomes]
rs56206315	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56220757	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56335904	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58641922	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58847083	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60939105	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61230444	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73936556	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73936560	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73936566	0.91[AFR][1000 genomes]
rs73936567	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534389	chr2:67388428-68225338	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
2	nsv1007345	chr2:67870225-67980094	Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Weak transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67866800-67884200	Weak transcription	Aorta	Aorta
2	chr2:67875000-67877200	Enhancers	Fetal Kidney	kidney
3	chr2:67875000-67878400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr2:67875200-67879000	Enhancers	Hela-S3	cervix
5	chr2:67875200-67879200	Enhancers	Fetal Stomach	stomach
6	chr2:67875600-67878800	Enhancers	Adipose Nuclei	Adipose
7	chr2:67875800-67877400	Enhancers	Fetal Heart	heart
8	chr2:67876200-67877200	Enhancers	Pancreas	Pancrea
9	chr2:67876200-67877400	Enhancers	Right Atrium	heart
10	chr2:67876200-67877600	Enhancers	Left Ventricle	heart
11	chr2:67876200-67878400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr2:67876200-67878800	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr2:67876200-67879000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr2:67876200-67879000	Enhancers	Colon Smooth Muscle	Colon
15	chr2:67876200-67879000	Enhancers	Fetal Muscle Leg	muscle
16	chr2:67876200-67879000	Enhancers	Ovary	ovary
17	chr2:67876200-67879200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr2:67876400-67877200	Bivalent Enhancer	Fetal Intestine Large	intestine
19	chr2:67876400-67877400	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr2:67876400-67877400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
21	chr2:67876400-67877600	Enhancers	NHLF	lung
22	chr2:67876400-67878400	Enhancers	Fetal Muscle Trunk	muscle
23	chr2:67876400-67878800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr2:67876400-67878800	Enhancers	A549	lung
25	chr2:67876400-67878800	Enhancers	HSMM	muscle
26	chr2:67876400-67879000	Enhancers	Muscle Satellite Cultured Cells	--
27	chr2:67876400-67879000	Enhancers	NHDF-Ad	bronchial
28	chr2:67876400-67879400	Enhancers	Brain Germinal Matrix	brain
29	chr2:67876600-67877600	Weak transcription	Brain Hippocampus Middle	brain
30	chr2:67876600-67877800	Weak transcription	Placenta	Placenta
31	chr2:67876600-67878000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr2:67876600-67879000	Enhancers	HSMMtube	muscle
33	chr2:67876600-67879000	Enhancers	NH-A	brain
34	chr2:67876800-67877200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr2:67876800-67877200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr2:67876800-67877200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr2:67876800-67877200	Enhancers	Esophagus	oesophagus
38	chr2:67876800-67877200	Flanking Active TSS	Fetal Lung	lung
39	chr2:67876800-67877200	Flanking Active TSS	Rectal Smooth Muscle	rectum
40	chr2:67876800-67877400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr2:67876800-67877400	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
42	chr2:67876800-67877800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr2:67876800-67878000	Enhancers	HMEC	breast
44	chr2:67876800-67878200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr2:67876800-67878200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr2:67876800-67878600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr2:67876800-67878800	Enhancers	Duodenum Smooth Muscle	Duodenum
48	chr2:67876800-67878800	Bivalent Enhancer	Fetal Intestine Small	intestine
49	chr2:67877000-67877200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
50	chr2:67877000-67877200	Bivalent Enhancer	Colonic Mucosa	Colon

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