Variant report

Variant	rs73936567
Chromosome Location	chr2:67887924-67887925
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10168189	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17034085	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17034108	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17040168	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1897174	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs55640041	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56206315	0.91[AFR][1000 genomes]
rs56335904	0.93[AFR][1000 genomes]
rs58641922	0.93[AFR][1000 genomes]
rs60939105	0.93[AFR][1000 genomes]
rs61230444	0.93[AFR][1000 genomes]
rs73936556	0.91[AFR][1000 genomes]
rs73936557	0.91[AFR][1000 genomes]
rs73936560	0.93[AFR][1000 genomes]
rs73936561	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73936562	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73936565	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73936566	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7590977	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534389	chr2:67388428-68225338	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
2	nsv1007345	chr2:67870225-67980094	Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Weak transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67884800-67888000	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr2:67887600-67888200	Enhancers	Colon Smooth Muscle	Colon
3	chr2:67887600-67888600	Enhancers	Aorta	Aorta

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links