Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs17034108	1.00[YRI][hapmap]
rs17034113	1.00[YRI][hapmap]
rs17034122	1.00[YRI][hapmap]
rs17034161	1.00[ASN][1000 genomes]
rs17034185	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17034217	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17034221	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17034243	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17034247	0.94[AFR][1000 genomes]
rs17034253	0.94[AFR][1000 genomes]
rs55935824	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56161313	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57765725	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58408781	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60203592	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61402034	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73936580	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73936581	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73936584	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73936592	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534389	chr2:67388428-68225338	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
2	nsv1007345	chr2:67870225-67980094	Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Weak transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv834250	chr2:67897722-68051532	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv999943	chr2:67951861-68205615	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67952000-67953400	Enhancers	Fetal Stomach	stomach
2	chr2:67952400-67955000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:67952800-67953600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr2:67952800-67953600	Enhancers	Fetal Kidney	kidney
5	chr2:67953000-67953400	Enhancers	Fetal Intestine Small	intestine
6	chr2:67953000-67953600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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