Variant report

Variant	rs17034499
Chromosome Location	chr1:10190773-10190774
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:10183636..10186063-chr1:10189351..10191130,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12047085	1.00[CHB][hapmap]
rs7523892	0.86[ASW][hapmap];0.81[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3417409	chr1:9683992-10241703	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv527217	chr1:10093457-10257167	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv522629	chr1:10125765-10239197	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs17034499	FAIM3	trans	lymphoblastoid	seeQTL
rs17034499	F13A1	trans	lymphoblastoid	seeQTL

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:10145800-10197000	Weak transcription	Stomach Mucosa	stomach
2	chr1:10163400-10219000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:10164000-10227400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr1:10167400-10192600	Weak transcription	Small Intestine	intestine
5	chr1:10167600-10207400	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr1:10169400-10195000	Weak transcription	Aorta	Aorta
7	chr1:10173000-10199400	Strong transcription	Primary T cells fromperipheralblood	blood
8	chr1:10175000-10207200	Strong transcription	Primary T helper cells fromperipheralblood	blood
9	chr1:10179800-10190800	Weak transcription	NHLF	lung
10	chr1:10180000-10211200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr1:10181000-10199600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr1:10182200-10231200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr1:10182400-10229400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr1:10182800-10190800	Weak transcription	NH-A	brain
15	chr1:10182800-10211400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr1:10182800-10221000	Weak transcription	Fetal Brain Male	brain
17	chr1:10182800-10231400	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr1:10184000-10235000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr1:10185000-10201800	Strong transcription	HUES48 Cell Line	embryonic stem cell
20	chr1:10185200-10199200	Strong transcription	Duodenum Mucosa	Duodenum
21	chr1:10185200-10201200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr1:10185400-10191200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
23	chr1:10185400-10193800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
24	chr1:10185400-10204400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr1:10185400-10207400	Strong transcription	Adipose Nuclei	Adipose
26	chr1:10185800-10211400	Weak transcription	A549	lung
27	chr1:10186000-10205800	Strong transcription	Primary monocytes fromperipheralblood	blood
28	chr1:10186200-10191200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr1:10186200-10193800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
30	chr1:10186200-10207800	Strong transcription	Fetal Intestine Large	intestine
31	chr1:10186400-10197800	Strong transcription	Primary T cells from cord blood	blood
32	chr1:10186400-10199400	Strong transcription	Fetal Muscle Leg	muscle
33	chr1:10186400-10207400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr1:10186600-10197600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr1:10186600-10197800	Strong transcription	Primary neutrophils fromperipheralblood	blood
36	chr1:10186600-10204200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr1:10186600-10207200	Strong transcription	Liver	Liver
38	chr1:10186600-10207800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr1:10186600-10207800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr1:10186800-10193800	Strong transcription	Rectal Mucosa Donor 29	rectum
41	chr1:10186800-10194000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr1:10186800-10198800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
43	chr1:10186800-10201800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr1:10186800-10202000	Strong transcription	HUES64 Cell Line	embryonic stem cell
45	chr1:10187000-10191200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr1:10187000-10191400	Strong transcription	NHDF-Ad	bronchial
47	chr1:10187000-10192800	Strong transcription	Lung	lung
48	chr1:10187000-10193600	Strong transcription	HUVEC	blood vessel
49	chr1:10187000-10193800	Strong transcription	Left Ventricle	heart
50	chr1:10187000-10197800	Strong transcription	H9 Cell Line	embryonic stem cell

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