Variant report

Variant	rs7523892
Chromosome Location	chr1:10089851-10089852
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs15177	1.00[MEX][hapmap]
rs17034495	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs17034499	0.86[ASW][hapmap];0.81[YRI][hapmap]
rs2278611	1.00[MEX][hapmap]
rs61782861	1.00[AMR][1000 genomes]
rs61782862	1.00[AMR][1000 genomes]
rs61782887	1.00[AMR][1000 genomes]
rs61782891	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61782892	1.00[AMR][1000 genomes]
rs61782902	1.00[AMR][1000 genomes]
rs61785624	1.00[AMR][1000 genomes]
rs6541078	1.00[MEX][hapmap]
rs6691365	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3417409	chr1:9683992-10241703	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv1012469	chr1:9925714-10147796	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv1012301	chr1:9963962-10118393	Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
4	nsv534853	chr1:9963962-10118393	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
5	nsv1001742	chr1:9971776-10116767	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7523892	F13A1	trans	lymphoblastoid	seeQTL

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:10074600-10092400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr1:10080400-10092400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:10085800-10093000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr1:10086800-10090200	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr1:10087800-10092200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr1:10087800-10092400	Weak transcription	GM12878-XiMat	blood
7	chr1:10088000-10091000	Weak transcription	Placenta	Placenta
8	chr1:10088200-10090000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr1:10089200-10090000	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr1:10089200-10091000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr1:10089200-10092200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr1:10089200-10092600	Enhancers	Fetal Heart	heart
13	chr1:10089400-10092000	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr1:10089600-10092400	Enhancers	Primary neutrophils fromperipheralblood	blood
15	chr1:10089600-10093000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr1:10089800-10090600	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
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