Variant report

Variant	rs61782861
Chromosome Location	chr1:10033474-10033475
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17034495	1.00[AMR][1000 genomes]
rs61782862	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61782887	1.00[AMR][1000 genomes]
rs61782891	1.00[AMR][1000 genomes]
rs61782892	1.00[AMR][1000 genomes]
rs61782902	1.00[AMR][1000 genomes]
rs61785624	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7523892	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3385337	chr1:9105242-10082223	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	549 gene(s)	inside rSNPs	diseases
2	esv3417409	chr1:9683992-10241703	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	esv3372906	chr1:9838995-10052992	Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv1012469	chr1:9925714-10147796	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
5	nsv1012301	chr1:9963962-10118393	Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
6	nsv534853	chr1:9963962-10118393	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
7	nsv1001742	chr1:9971776-10116767	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
8	nsv1005461	chr1:9972921-10038862	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
9	nsv534855	chr1:9972921-10038862	Active TSS Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:10004000-10034000	Weak transcription	Aorta	Aorta
2	chr1:10004200-10033800	Weak transcription	Gastric	stomach
3	chr1:10008000-10035000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr1:10008600-10035600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr1:10010800-10034800	Weak transcription	NHEK	skin
6	chr1:10010800-10035000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr1:10010800-10035600	Weak transcription	Fetal Kidney	kidney
8	chr1:10010800-10036400	Weak transcription	Esophagus	oesophagus
9	chr1:10011000-10034200	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr1:10011000-10044800	Weak transcription	NHDF-Ad	bronchial
11	chr1:10011800-10042200	Weak transcription	K562	blood
12	chr1:10016400-10042400	Weak transcription	HMEC	breast
13	chr1:10019800-10037600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr1:10021400-10039200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr1:10021400-10043200	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr1:10021600-10033800	Weak transcription	Pancreas	Pancrea
17	chr1:10021600-10041600	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr1:10021600-10041600	Weak transcription	HSMMtube	muscle
19	chr1:10021600-10049000	Weak transcription	HSMM	muscle
20	chr1:10021800-10037600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr1:10023400-10044000	Weak transcription	HepG2	liver
22	chr1:10025800-10046800	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr1:10027600-10033800	Weak transcription	Dnd41	blood
24	chr1:10028400-10050000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr1:10029600-10033800	Weak transcription	Right Ventricle	heart
26	chr1:10029600-10035600	Weak transcription	Fetal Lung	lung
27	chr1:10029600-10041000	Weak transcription	Osteobl	bone
28	chr1:10029600-10042200	Weak transcription	GM12878-XiMat	blood
29	chr1:10030400-10041000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr1:10030400-10043000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr1:10030600-10033600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr1:10030600-10034800	Weak transcription	Fetal Heart	heart
33	chr1:10030800-10044600	Weak transcription	Brain Germinal Matrix	brain
34	chr1:10031200-10037000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr1:10031200-10042200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr1:10031200-10042200	Weak transcription	Small Intestine	intestine
37	chr1:10031400-10035600	Weak transcription	Fetal Brain Female	brain
38	chr1:10031600-10034200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr1:10031600-10038400	Strong transcription	Monocytes-CD14+_RO01746	blood
40	chr1:10031600-10039000	Strong transcription	Stomach Smooth Muscle	stomach
41	chr1:10031600-10039600	Strong transcription	Primary neutrophils fromperipheralblood	blood
42	chr1:10031600-10044600	Strong transcription	Fetal Intestine Large	intestine
43	chr1:10031600-10045600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr1:10031600-10046200	Strong transcription	Fetal Intestine Small	intestine
45	chr1:10031600-10047200	Strong transcription	Fetal Stomach	stomach
46	chr1:10031800-10037000	Strong transcription	Left Ventricle	heart
47	chr1:10031800-10039000	Strong transcription	Lung	lung
48	chr1:10031800-10039200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr1:10031800-10039600	Strong transcription	Skeletal Muscle Male	skeletal muscle
50	chr1:10032000-10034400	Strong transcription	Thymus	Thymus

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