Variant report

Variant	rs17035189
Chromosome Location	chr1:10597024-10597025
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10779737	0.83[EUR][1000 genomes]
rs11121579	0.85[CEU][hapmap]
rs11121581	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11580264	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11584327	0.88[CEU][hapmap];1.00[GIH][hapmap];0.89[TSI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12073943	0.88[EUR][1000 genomes]
rs12127400	0.91[CHB][hapmap];0.95[CHD][hapmap];0.90[JPT][hapmap];0.81[MEX][hapmap];0.99[ASN][1000 genomes]
rs12565133	0.84[TSI][hapmap]
rs1755592	0.89[EUR][1000 genomes]
rs2086650	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs2186949	0.84[EUR][1000 genomes]
rs2274985	0.88[CEU][hapmap];1.00[GIH][hapmap];0.89[TSI][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2781233	0.84[CEU][hapmap]
rs55913143	0.99[ASN][1000 genomes]
rs589151	0.88[EUR][1000 genomes]
rs602601	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs604369	0.88[CEU][hapmap];1.00[GIH][hapmap];0.89[TSI][hapmap];0.88[EUR][1000 genomes]
rs604814	0.84[CEU][hapmap];0.91[GIH][hapmap];0.83[TSI][hapmap];0.81[EUR][1000 genomes]
rs6676491	0.90[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs6688558	0.91[CHB][hapmap];0.97[CHD][hapmap];0.90[JPT][hapmap];0.81[MEX][hapmap];1.00[ASN][1000 genomes]
rs6696891	1.00[ASN][1000 genomes]
rs670666	0.84[CEU][hapmap];0.87[TSI][hapmap]
rs673254	0.84[CEU][hapmap]
rs684016	0.83[TSI][hapmap]
rs7419116	0.88[CEU][hapmap];0.84[EUR][1000 genomes]
rs7543322	0.98[GIH][hapmap];0.85[TSI][hapmap];0.83[EUR][1000 genomes]
rs7548453	0.85[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];1.00[LWK][hapmap];0.91[MKK][hapmap];0.98[TSI][hapmap];0.94[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7555790	0.91[CHB][hapmap];0.98[CHD][hapmap];0.90[JPT][hapmap];0.81[MEX][hapmap];0.99[ASN][1000 genomes]
rs9660218	0.91[CHB][hapmap];0.90[JPT][hapmap];0.88[YRI][hapmap];0.95[AFR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817370	chr1:10305470-10697150	Weak transcription Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv1008021	chr1:10363794-10802633	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv1003498	chr1:10445928-10607351	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv998731	chr1:10464176-10607351	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv2521	chr1:10553530-10598171	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	nsv545395	chr1:10584672-10613660	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:10572200-10598600	Weak transcription	Brain Anterior Caudate	brain
2	chr1:10577000-10603600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr1:10579400-10610200	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr1:10584800-10603800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr1:10585200-10603600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr1:10585200-10603800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr1:10588400-10598200	Weak transcription	Pancreas	Pancrea
8	chr1:10588800-10599200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr1:10589000-10600000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr1:10589200-10598600	Weak transcription	Brain Cingulate Gyrus	brain
11	chr1:10589400-10664800	Weak transcription	Aorta	Aorta
12	chr1:10590200-10597200	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr1:10590200-10602800	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr1:10590200-10605200	Weak transcription	NHDF-Ad	bronchial
15	chr1:10590600-10599400	Weak transcription	GM12878-XiMat	blood
16	chr1:10590800-10598600	Weak transcription	Right Atrium	heart
17	chr1:10590800-10599800	Weak transcription	Right Ventricle	heart
18	chr1:10590800-10601000	Weak transcription	A549	lung
19	chr1:10591000-10600200	Weak transcription	HUVEC	blood vessel
20	chr1:10591000-10639400	Weak transcription	Hela-S3	cervix
21	chr1:10591200-10597400	Weak transcription	Fetal Thymus	thymus
22	chr1:10591200-10599200	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr1:10591200-10599200	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr1:10591200-10601000	Weak transcription	Placenta	Placenta
25	chr1:10591200-10601400	Weak transcription	Colonic Mucosa	Colon
26	chr1:10591400-10599600	Weak transcription	Fetal Kidney	kidney
27	chr1:10591400-10599600	Weak transcription	Ovary	ovary
28	chr1:10591400-10609000	Weak transcription	Small Intestine	intestine
29	chr1:10591400-10629200	Weak transcription	Primary hematopoietic stem cells	blood
30	chr1:10591600-10599800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr1:10591600-10616000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
32	chr1:10592000-10598600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr1:10592000-10598600	Weak transcription	Stomach Smooth Muscle	stomach
34	chr1:10592000-10599200	Weak transcription	HSMM	muscle
35	chr1:10592000-10599600	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr1:10592200-10599200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr1:10592200-10599200	Weak transcription	NH-A	brain
38	chr1:10592200-10615800	Weak transcription	Primary neutrophils fromperipheralblood	blood
39	chr1:10592400-10598600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr1:10592600-10597200	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr1:10592600-10597600	Weak transcription	Psoas Muscle	Psoas
42	chr1:10592600-10598200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr1:10592600-10598600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr1:10592600-10599200	Weak transcription	Fetal Lung	lung
45	chr1:10592800-10598000	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr1:10592800-10599800	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr1:10593000-10598000	Weak transcription	Fetal Heart	heart
48	chr1:10593000-10598200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr1:10593000-10598600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr1:10593000-10599200	Weak transcription	H1 Cell Line	embryonic stem cell

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