Variant report

Variant	rs6676491
Chromosome Location	chr1:10633421-10633422
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:10632331..10635200-chr1:10638262..10640541,2	K562	blood:
2	chr1:10632188..10633727-chr1:10646981..10648611,2	K562	blood:
3	chr1:10630568..10633704-chr1:10633962..10635660,3	K562	blood:
4	chr1:10628385..10630048-chr1:10632032..10633637,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12117392	0.94[EUR][1000 genomes]
rs12120962	0.94[EUR][1000 genomes]
rs12127400	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12139169	0.98[EUR][1000 genomes]
rs17035189	0.90[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs2086650	0.95[AFR][1000 genomes]
rs55913143	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6688558	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6696891	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs747124	0.80[AFR][1000 genomes]
rs7512495	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7548453	0.89[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7555790	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9660218	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817370	chr1:10305470-10697150	Weak transcription Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv1008021	chr1:10363794-10802633	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv1015079	chr1:10611403-10645176	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv1009596	chr1:10626249-10652605	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:10589400-10664800	Weak transcription	Aorta	Aorta
2	chr1:10591000-10639400	Weak transcription	Hela-S3	cervix
3	chr1:10602000-10639600	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr1:10603000-10659000	Weak transcription	Primary B cells from cord blood	blood
5	chr1:10605000-10659000	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr1:10606000-10638000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr1:10607600-10636800	Weak transcription	Primary T cells from cord blood	blood
8	chr1:10607600-10636800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr1:10607600-10641400	Weak transcription	Lung	lung
10	chr1:10616400-10633600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr1:10616400-10638200	Weak transcription	Esophagus	oesophagus
12	chr1:10622800-10634800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr1:10623600-10645600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr1:10624600-10636800	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr1:10624800-10634800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr1:10624800-10646000	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr1:10626000-10637800	Weak transcription	Psoas Muscle	Psoas
18	chr1:10626400-10637800	Weak transcription	Liver	Liver
19	chr1:10627600-10635600	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr1:10627800-10641000	Weak transcription	Fetal Stomach	stomach
21	chr1:10627800-10643000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr1:10628000-10640000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr1:10628000-10650200	Weak transcription	Fetal Lung	lung
24	chr1:10628400-10661600	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr1:10628800-10651200	Weak transcription	Stomach Smooth Muscle	stomach
26	chr1:10629600-10639000	Weak transcription	Right Ventricle	heart
27	chr1:10629800-10636800	Weak transcription	Fetal Intestine Small	intestine
28	chr1:10629800-10638000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr1:10629800-10643600	Weak transcription	Fetal Muscle Leg	muscle
30	chr1:10629800-10659000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr1:10630000-10636600	Weak transcription	Primary B cells from peripheral blood	blood
32	chr1:10630000-10638800	Weak transcription	Primary hematopoietic stem cells	blood
33	chr1:10630800-10638000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr1:10631800-10659200	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr1:10632600-10633600	Weak transcription	Osteobl	bone
36	chr1:10632600-10698000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr1:10633400-10634000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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