Variant report
| Variant | rs17035521 |
|---|---|
| Chromosome Location | chr12:104796709-104796710 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs10735392 | 0.86[CEU][hapmap] |
| rs10735393 | 0.86[CEU][hapmap] |
| rs10745995 | 0.86[CEU][hapmap] |
| rs10745996 | 0.86[CEU][hapmap] |
| rs10861204 | 0.86[CEU][hapmap] |
| rs10861216 | 0.86[EUR][1000 genomes] |
| rs12425334 | 0.86[EUR][1000 genomes] |
| rs12425523 | 0.86[EUR][1000 genomes] |
| rs17035504 | 1.00[CEU][hapmap];0.90[GIH][hapmap];0.83[EUR][1000 genomes] |
| rs17202862 | 0.93[CEU][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1922264 | 0.86[EUR][1000 genomes] |
| rs3935020 | 0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4246269 | 0.86[CEU][hapmap] |
| rs4246271 | 0.86[CEU][hapmap] |
| rs4403872 | 0.86[EUR][1000 genomes] |
| rs4630362 | 0.92[CEU][hapmap] |
| rs4964288 | 0.86[CEU][hapmap] |
| rs4964752 | 0.86[CEU][hapmap] |
| rs4964761 | 0.86[CEU][hapmap] |
| rs4964779 | 0.86[CEU][hapmap] |
| rs57710522 | 0.83[EUR][1000 genomes] |
| rs60394569 | 0.83[EUR][1000 genomes] |
| rs6539137 | 0.83[CEU][hapmap] |
| rs7138035 | 0.82[CEU][hapmap] |
| rs7294997 | 0.83[CEU][hapmap] |
| rs73181944 | 0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73183716 | 0.83[EUR][1000 genomes] |
| rs73183722 | 0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73183723 | 0.86[EUR][1000 genomes] |
| rs7486552 | 0.83[EUR][1000 genomes] |
| rs7962423 | 0.86[CEU][hapmap] |
| rs9739833 | 0.86[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv899494 | chr12:104561521-104806232 | Flanking Active TSS Weak transcription Genic enhancers Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 34 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:104778200-104801400 | Weak transcription | A549 | lung |
