Variant report

Variant	rs12425523
Chromosome Location	chr12:104793708-104793709
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10735392	0.86[CEU][hapmap]
rs10735393	0.86[CEU][hapmap]
rs10745995	0.86[CEU][hapmap]
rs10745996	0.86[CEU][hapmap]
rs10861204	0.86[CEU][hapmap]
rs10861216	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12425334	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13377715	0.92[ASN][1000 genomes]
rs17035504	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17035521	0.86[EUR][1000 genomes]
rs17202862	0.93[CEU][hapmap]
rs1922264	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3935021	0.87[AMR][1000 genomes]
rs4246269	0.86[CEU][hapmap]
rs4246271	0.86[CEU][hapmap]
rs4403872	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4630362	0.93[CEU][hapmap]
rs4964288	0.86[CEU][hapmap]
rs4964752	0.86[CEU][hapmap]
rs4964761	0.86[CEU][hapmap]
rs4964779	0.86[CEU][hapmap]
rs4964789	0.80[ASN][1000 genomes]
rs56831540	0.84[ASN][1000 genomes]
rs57710522	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57954752	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59348790	0.88[ASN][1000 genomes]
rs60394569	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6539137	0.84[CEU][hapmap]
rs7294997	0.83[CEU][hapmap]
rs73183716	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73183722	0.83[EUR][1000 genomes]
rs73183723	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7486552	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7962423	0.86[CEU][hapmap]
rs9739833	0.86[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899494	chr12:104561521-104806232	Flanking Active TSS Weak transcription Genic enhancers Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:104778200-104801400	Weak transcription	A549	lung
2	chr12:104792200-104794400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr12:104793200-104794000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr12:104793400-104794800	Enhancers	Dnd41	blood
5	chr12:104793600-104794000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr12:104793600-104794400	Enhancers	Primary hematopoietic stem cells short term culture	blood

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