Variant report

Variant	rs59348790
Chromosome Location	chr12:104787158-104787159
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10861216	0.90[ASN][1000 genomes]
rs12425334	0.87[ASN][1000 genomes]
rs12425523	0.88[ASN][1000 genomes]
rs13377715	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17035504	0.85[ASN][1000 genomes]
rs1922264	0.88[ASN][1000 genomes]
rs4403872	0.88[ASN][1000 genomes]
rs57710522	0.89[ASN][1000 genomes]
rs57954752	0.81[ASN][1000 genomes]
rs60394569	0.89[ASN][1000 genomes]
rs73183716	0.91[ASN][1000 genomes]
rs73183723	0.91[ASN][1000 genomes]
rs7486552	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899494	chr12:104561521-104806232	Flanking Active TSS Weak transcription Genic enhancers Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:104778200-104801400	Weak transcription	A549	lung
2	chr12:104779600-104787600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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