Variant report

Variant	rs3935021
Chromosome Location	chr12:104772032-104772033
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:104770811..104773489-chr12:104774057..104776555,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10735395	0.82[EUR][1000 genomes]
rs10861204	0.82[EUR][1000 genomes]
rs12425523	0.87[AMR][1000 genomes]
rs12426783	0.89[EUR][1000 genomes]
rs17035504	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17202862	0.89[EUR][1000 genomes]
rs1922264	0.87[AMR][1000 genomes]
rs3935020	0.89[EUR][1000 genomes]
rs4246269	0.82[EUR][1000 genomes]
rs4246270	0.82[EUR][1000 genomes]
rs4246271	0.82[EUR][1000 genomes]
rs4403872	0.87[AMR][1000 genomes]
rs4447242	0.82[EUR][1000 genomes]
rs4502051	0.82[EUR][1000 genomes]
rs4964288	0.82[EUR][1000 genomes]
rs4964779	0.82[EUR][1000 genomes]
rs4964784	0.82[EUR][1000 genomes]
rs57710522	0.81[EUR][1000 genomes]
rs57954752	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs60394569	0.81[EUR][1000 genomes]
rs7298613	0.82[EUR][1000 genomes]
rs73181916	0.88[EUR][1000 genomes]
rs73181919	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73181926	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73181944	0.89[EUR][1000 genomes]
rs73183716	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73183723	0.86[AMR][1000 genomes]
rs7486552	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7962423	0.82[EUR][1000 genomes]
rs9738614	0.82[EUR][1000 genomes]
rs9739826	0.82[EUR][1000 genomes]
rs9739833	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899494	chr12:104561521-104806232	Flanking Active TSS Weak transcription Genic enhancers Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:104766000-104778200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr12:104766400-104775400	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr12:104766800-104774800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr12:104767200-104775600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr12:104767200-104776000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr12:104768800-104775400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr12:104769200-104775400	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr12:104770800-104775600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr12:104771000-104772200	Enhancers	Placenta	Placenta
10	chr12:104771000-104775400	Weak transcription	Brain Angular Gyrus	brain
11	chr12:104771000-104775400	Weak transcription	Hela-S3	cervix
12	chr12:104771200-104775200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr12:104771200-104775400	Weak transcription	Brain Anterior Caudate	brain
14	chr12:104771200-104775600	Weak transcription	Brain Cingulate Gyrus	brain
15	chr12:104771200-104775600	Weak transcription	NHLF	lung
16	chr12:104771400-104775400	Weak transcription	Brain Hippocampus Middle	brain
17	chr12:104771400-104775400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr12:104771400-104775400	Weak transcription	Brain Substantia Nigra	brain
19	chr12:104771400-104775600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr12:104771400-104775600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr12:104771400-104775600	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr12:104771400-104775600	Weak transcription	HMEC	breast
23	chr12:104771400-104775600	Weak transcription	NHDF-Ad	bronchial
24	chr12:104771400-104775600	Weak transcription	NHEK	skin
25	chr12:104771400-104775800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr12:104771600-104775200	Weak transcription	A549	lung
27	chr12:104771600-104775400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr12:104771800-104781000	Weak transcription	Aorta	Aorta

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