Variant report

Variant	rs17038081
Chromosome Location	chr4:160284439-160284440
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:160282232..160283919-chr4:160283974..160285950,2	K562	blood:
2	chr4:160283609..160286187-chr4:160286317..160288730,2	K562	blood:
3	chr4:160274137..160276479-chr4:160281764..160285889,4	K562	blood:
4	chr4:160274137..160276051-chr4:160282977..160285281,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10517700	0.86[EUR][1000 genomes]
rs17038063	1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2016804	0.86[EUR][1000 genomes]
rs3749464	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4083283	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022771	chr4:160188801-160324683	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160250400-160285200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr4:160250800-160284600	Strong transcription	Liver	Liver
3	chr4:160264600-160284800	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr4:160266800-160287600	Weak transcription	Psoas Muscle	Psoas
5	chr4:160271000-160286400	Weak transcription	Small Intestine	intestine
6	chr4:160274200-160289800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr4:160275200-160287800	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr4:160275200-160303800	Weak transcription	Right Atrium	heart
9	chr4:160275400-160288000	Weak transcription	A549	lung
10	chr4:160280200-160284800	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr4:160280200-160286400	Weak transcription	Duodenum Mucosa	Duodenum
12	chr4:160280200-160289800	Weak transcription	Spleen	Spleen
13	chr4:160280200-160290800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr4:160280200-160295200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr4:160280400-160286400	Weak transcription	Fetal Intestine Small	intestine
16	chr4:160280600-160286200	Weak transcription	Esophagus	oesophagus
17	chr4:160280600-160286200	Weak transcription	Gastric	stomach
18	chr4:160280600-160288000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr4:160280600-160288200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr4:160280600-160290200	Weak transcription	Pancreas	Pancrea
21	chr4:160280800-160285400	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr4:160280800-160286800	Weak transcription	Colon Smooth Muscle	Colon
23	chr4:160280800-160287400	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr4:160280800-160287600	Weak transcription	HepG2	liver
25	chr4:160280800-160288000	Weak transcription	Left Ventricle	heart
26	chr4:160280800-160288200	Weak transcription	Fetal Thymus	thymus
27	chr4:160280800-160288200	Weak transcription	HSMMtube	muscle
28	chr4:160280800-160289600	Weak transcription	Lung	lung
29	chr4:160281200-160288000	Weak transcription	Primary B cells from peripheral blood	blood
30	chr4:160281200-160288000	Weak transcription	Brain Anterior Caudate	brain
31	chr4:160281200-160288000	Weak transcription	Brain Cingulate Gyrus	brain
32	chr4:160281200-160288200	Weak transcription	GM12878-XiMat	blood
33	chr4:160281200-160292000	Weak transcription	Brain Germinal Matrix	brain
34	chr4:160281800-160286200	Weak transcription	Primary hematopoietic stem cells	blood
35	chr4:160281800-160286800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr4:160281800-160287400	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr4:160282000-160285600	Weak transcription	Brain Substantia Nigra	brain
38	chr4:160282000-160286200	Weak transcription	Fetal Kidney	kidney
39	chr4:160282000-160286200	Weak transcription	Rectal Mucosa Donor 29	rectum
40	chr4:160282000-160287800	Weak transcription	Brain Angular Gyrus	brain
41	chr4:160282000-160287800	Weak transcription	Fetal Brain Female	brain
42	chr4:160282000-160288000	Weak transcription	Fetal Lung	lung
43	chr4:160282000-160288400	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr4:160282200-160285200	Weak transcription	HUVEC	blood vessel
45	chr4:160282200-160286200	Weak transcription	HUES48 Cell Line	embryonic stem cell
46	chr4:160282200-160287000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr4:160282200-160287600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr4:160282200-160288200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr4:160282200-160288400	Weak transcription	Primary B cells from cord blood	blood
50	chr4:160282200-160291200	Weak transcription	Aorta	Aorta

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