Variant report

Variant	rs3749464
Chromosome Location	chr4:160279732-160279733
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:160268447..160272441-chr4:160277985..160281156,3	K562	blood:
2	chr4:160279549..160283118-chr4:160285686..160287785,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000109756	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11939143	0.90[EUR][1000 genomes]
rs17038063	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17038081	1.00[ASN][1000 genomes]
rs28566041	1.00[EUR][1000 genomes]
rs28889884	1.00[EUR][1000 genomes]
rs3805139	1.00[GIH][hapmap]
rs72967784	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022771	chr4:160188801-160324683	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160237000-160284400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr4:160238600-160282200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:160241000-160281600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr4:160250000-160283400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr4:160250000-160284400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr4:160250400-160285200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr4:160250800-160284600	Strong transcription	Liver	Liver
8	chr4:160258000-160283200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr4:160259000-160282800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr4:160259000-160282800	Strong transcription	Placenta	Placenta
11	chr4:160259200-160283000	Strong transcription	Cortex derived primary cultured neurospheres	brain
12	chr4:160259400-160283000	Strong transcription	Fetal Intestine Large	intestine
13	chr4:160259600-160282800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
14	chr4:160260000-160282000	Strong transcription	Primary T helper cells fromperipheralblood	blood
15	chr4:160261200-160281600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr4:160264400-160283000	Strong transcription	Primary monocytes fromperipheralblood	blood
17	chr4:160264600-160281000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr4:160264600-160283200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr4:160264600-160284800	Strong transcription	Monocytes-CD14+_RO01746	blood
20	chr4:160266800-160287600	Weak transcription	Psoas Muscle	Psoas
21	chr4:160267400-160282400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr4:160267800-160282400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr4:160268800-160282800	Weak transcription	Stomach Mucosa	stomach
24	chr4:160269600-160282000	Strong transcription	HUES64 Cell Line	embryonic stem cell
25	chr4:160270400-160280000	Strong transcription	Duodenum Mucosa	Duodenum
26	chr4:160270600-160283000	Strong transcription	Primary neutrophils fromperipheralblood	blood
27	chr4:160270800-160281800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr4:160271000-160286400	Weak transcription	Small Intestine	intestine
29	chr4:160271200-160283000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr4:160271600-160281800	Strong transcription	Primary hematopoietic stem cells	blood
31	chr4:160271600-160283600	Strong transcription	Duodenum Smooth Muscle	Duodenum
32	chr4:160271600-160284200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
33	chr4:160271800-160280000	Strong transcription	Primary B cells from peripheral blood	blood
34	chr4:160272000-160280800	Strong transcription	Sigmoid Colon	Sigmoid Colon
35	chr4:160272000-160281200	Strong transcription	Brain Germinal Matrix	brain
36	chr4:160272000-160282200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr4:160272000-160282400	Strong transcription	Stomach Smooth Muscle	stomach
38	chr4:160272000-160282600	Strong transcription	Dnd41	blood
39	chr4:160272000-160283200	Strong transcription	Primary T cells from cord blood	blood
40	chr4:160272200-160280400	Strong transcription	Fetal Intestine Small	intestine
41	chr4:160272400-160282000	Strong transcription	Skeletal Muscle Female	skeletal muscle
42	chr4:160272600-160282600	Strong transcription	Skeletal Muscle Male	skeletal muscle
43	chr4:160273600-160280800	Strong transcription	Fetal Thymus	thymus
44	chr4:160273600-160282000	Strong transcription	Rectal Mucosa Donor 29	rectum
45	chr4:160273600-160282600	Strong transcription	Fetal Muscle Trunk	muscle
46	chr4:160273600-160283000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
47	chr4:160273800-160281200	Strong transcription	GM12878-XiMat	blood
48	chr4:160274200-160289800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr4:160275000-160283200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
50	chr4:160275200-160281000	Weak transcription	Pancreatic Islets	Pancreatic Islet

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