Variant report

Variant	rs17038134
Chromosome Location	chr4:160321342-160321343
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:160320966..160323361-chr4:160350586..160353397,2	K562	blood:
2	chr4:160320949..160323561-chr4:160326956..160329279,2	K562	blood:
3	chr4:160320145..160323561-chr4:160326463..160329279,3	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs16999167	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs17038128	0.96[AFR][1000 genomes]
rs17038144	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022771	chr4:160188801-160324683	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160303800-160321600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr4:160312800-160321400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr4:160313000-160321800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr4:160313000-160322200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr4:160313200-160322000	Weak transcription	HMEC	breast
6	chr4:160319200-160322200	Weak transcription	Psoas Muscle	Psoas
7	chr4:160319800-160321600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr4:160319800-160321800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr4:160319800-160322000	Weak transcription	HSMM	muscle
10	chr4:160320000-160321600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr4:160320000-160321600	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr4:160320000-160321600	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr4:160320000-160321600	Weak transcription	NHDF-Ad	bronchial
14	chr4:160320000-160322000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr4:160320000-160322000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr4:160320000-160322000	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr4:160320000-160322000	Weak transcription	NHLF	lung
18	chr4:160320000-160322200	Weak transcription	Adipose Nuclei	Adipose
19	chr4:160320000-160322400	Weak transcription	Osteobl	bone
20	chr4:160320200-160321600	Weak transcription	Fetal Muscle Leg	muscle
21	chr4:160320200-160321600	Weak transcription	Left Ventricle	heart
22	chr4:160320200-160321600	Weak transcription	NH-A	brain
23	chr4:160320200-160322000	Weak transcription	Right Atrium	heart
24	chr4:160320200-160322400	Weak transcription	Aorta	Aorta
25	chr4:160320200-160323000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr4:160320200-160323000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr4:160320400-160322200	Weak transcription	HUVEC	blood vessel
28	chr4:160321200-160321600	Weak transcription	Fetal Brain Male	brain

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