Variant report

Variant	rs17038128
Chromosome Location	chr4:160319690-160319691
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10013839	1.00[AMR][1000 genomes]
rs10018060	1.00[AMR][1000 genomes]
rs10018205	1.00[AMR][1000 genomes]
rs10018384	1.00[AMR][1000 genomes]
rs10028631	1.00[AMR][1000 genomes]
rs10034325	1.00[AMR][1000 genomes]
rs16999167	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17038134	0.96[AFR][1000 genomes]
rs17038144	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17038313	1.00[AMR][1000 genomes]
rs28416073	1.00[AMR][1000 genomes]
rs28450538	1.00[AMR][1000 genomes]
rs28705976	1.00[AMR][1000 genomes]
rs28716121	1.00[AMR][1000 genomes]
rs28808320	1.00[AMR][1000 genomes]
rs9993097	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022771	chr4:160188801-160324683	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160303800-160321600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr4:160312800-160321400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr4:160313000-160321800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr4:160313000-160322200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr4:160313200-160322000	Weak transcription	HMEC	breast
6	chr4:160318800-160320200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr4:160319000-160319800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr4:160319000-160320000	Enhancers	Adipose Nuclei	Adipose
9	chr4:160319000-160320000	Enhancers	NHDF-Ad	bronchial
10	chr4:160319000-160320000	Enhancers	NHLF	lung
11	chr4:160319000-160320200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr4:160319000-160320200	Enhancers	NH-A	brain
13	chr4:160319000-160320400	Enhancers	HUVEC	blood vessel
14	chr4:160319200-160319800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr4:160319200-160320000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr4:160319200-160320000	Enhancers	Muscle Satellite Cultured Cells	--
17	chr4:160319200-160322200	Weak transcription	Psoas Muscle	Psoas
18	chr4:160319400-160319800	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr4:160319400-160319800	Flanking Active TSS	Osteobl	bone
20	chr4:160319400-160320000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr4:160319600-160319800	Enhancers	HSMM	muscle
22	chr4:160319600-160320000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr4:160319600-160320200	Enhancers	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links