Variant report

Variant	rs17038313
Chromosome Location	chr4:160409301-160409302
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10013839	1.00[AMR][1000 genomes]
rs10018060	1.00[AMR][1000 genomes]
rs10018205	1.00[AMR][1000 genomes]
rs10018384	1.00[AMR][1000 genomes]
rs10028631	1.00[AMR][1000 genomes]
rs10034325	1.00[AMR][1000 genomes]
rs11931427	1.00[AMR][1000 genomes]
rs11931591	1.00[AMR][1000 genomes]
rs16999167	1.00[AMR][1000 genomes]
rs17038128	1.00[AMR][1000 genomes]
rs17038144	1.00[AMR][1000 genomes]
rs28416073	1.00[AMR][1000 genomes]
rs28450538	1.00[AMR][1000 genomes]
rs28705976	1.00[AMR][1000 genomes]
rs28716121	1.00[AMR][1000 genomes]
rs28808320	1.00[AMR][1000 genomes]
rs9993097	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015469	chr4:160389277-160841619	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537316	chr4:160389277-160841619	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160406200-160412800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr4:160408200-160409800	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr4:160408800-160409600	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr4:160408800-160412400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr4:160409000-160410400	Weak transcription	Liver	Liver
6	chr4:160409000-160412600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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