Variant report

Variant	rs9993097
Chromosome Location	chr4:160375940-160375941
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10013839	1.00[AMR][1000 genomes]
rs10018060	1.00[AMR][1000 genomes]
rs10018205	1.00[AMR][1000 genomes]
rs10018384	1.00[AMR][1000 genomes]
rs10028631	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10034325	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16999167	1.00[AMR][1000 genomes]
rs17038128	1.00[AMR][1000 genomes]
rs17038144	1.00[AMR][1000 genomes]
rs17038313	1.00[AMR][1000 genomes]
rs28416073	1.00[AMR][1000 genomes]
rs28450538	1.00[AMR][1000 genomes]
rs28537459	0.88[AFR][1000 genomes]
rs28705976	1.00[AMR][1000 genomes]
rs28716121	1.00[AMR][1000 genomes]
rs28808320	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028244	chr4:160370159-160395135	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1024453	chr4:160373221-160395135	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv523255	chr4:160374255-160388504	Flanking Active TSS Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160368200-160376600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr4:160368400-160390200	Weak transcription	NHEK	skin
3	chr4:160373800-160386200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr4:160374600-160376600	Weak transcription	NHDF-Ad	bronchial
5	chr4:160374800-160377800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr4:160375000-160377000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr4:160375800-160376200	Enhancers	A549	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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