Variant report

Variant	rs10013839
Chromosome Location	chr4:160387434-160387435
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10018060	1.00[AMR][1000 genomes]
rs10018205	1.00[AMR][1000 genomes]
rs10018384	1.00[AMR][1000 genomes]
rs10028631	1.00[AMR][1000 genomes]
rs10034325	1.00[AMR][1000 genomes]
rs16999167	1.00[AMR][1000 genomes]
rs17038128	1.00[AMR][1000 genomes]
rs17038144	1.00[AMR][1000 genomes]
rs17038313	1.00[AMR][1000 genomes]
rs28416073	1.00[AMR][1000 genomes]
rs28450538	1.00[AMR][1000 genomes]
rs28705976	1.00[AMR][1000 genomes]
rs28716121	1.00[AMR][1000 genomes]
rs28808320	1.00[AMR][1000 genomes]
rs9993097	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028244	chr4:160370159-160395135	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1024453	chr4:160373221-160395135	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv523255	chr4:160374255-160388504	Flanking Active TSS Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160368400-160390200	Weak transcription	NHEK	skin
2	chr4:160387000-160389000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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