Variant report

Variant	rs1703820
Chromosome Location	chr18:9073971-9073972
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr18:9072303..9073987-chr18:9134312..9136561,2	K562	blood:
2	chr18:9073285..9074269-chr18:9516154..9517091,4	K562	blood:
3	chr18:9073346..9075648-chr18:9098542..9100172,2	K562	blood:
4	chr18:9072455..9076477-chr18:9100981..9105437,5	MCF-7	breast:
5	chr18:9073263..9075396-chr18:9076515..9079059,3	K562	blood:
6	chr18:9068940..9073336-chr18:9073886..9077279,4	K562	blood:
7	chr18:9070965..9077648-chr18:9133458..9138143,9	MCF-7	breast:
8	chr18:9073278..9075648-chr18:9098542..9100250,3	K562	blood:
9	chr18:9073419..9074239-chr18:9147700..9148986,7	MCF-7	breast:
10	chr18:9073278..9074237-chr18:9147638..9148595,6	K562	blood:
11	chr18:9073896..9076143-chr18:9077487..9080405,2	K562	blood:
12	chr18:9073564..9076057-chr18:9136995..9139021,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000266053	Chromatin interaction
ENSG00000178127	Chromatin interaction
ENSG00000101745	Chromatin interaction
ENSG00000265257	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1784773	1.00[CEU][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs1785560	0.88[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064883	chr18:8709670-9133224	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv870110	chr18:8958418-9075363	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv916373	chr18:9026803-9592201	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
4	esv1832073	chr18:9048118-9094498	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:9066200-9077000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr18:9068800-9074000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr18:9068800-9074000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr18:9069800-9074000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr18:9073000-9075200	Enhancers	Liver	Liver
6	chr18:9073200-9075400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr18:9073400-9074000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr18:9073400-9074000	Active TSS	A549	lung
9	chr18:9073400-9074200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr18:9073400-9074200	Enhancers	NHDF-Ad	bronchial
11	chr18:9073400-9074600	Enhancers	Fetal Intestine Large	intestine
12	chr18:9073400-9075200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr18:9073400-9075200	Enhancers	Muscle Satellite Cultured Cells	--
14	chr18:9073600-9074000	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr18:9073600-9074000	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr18:9073600-9074000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr18:9073600-9074000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
18	chr18:9073600-9074000	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
19	chr18:9073600-9074000	Flanking Active TSS	Brain Substantia Nigra	brain
20	chr18:9073600-9074000	Active TSS	Duodenum Smooth Muscle	Duodenum
21	chr18:9073600-9074000	Enhancers	Fetal Brain Male	brain
22	chr18:9073600-9074000	Flanking Bivalent TSS/Enh	Fetal Kidney	kidney
23	chr18:9073600-9074000	Enhancers	Stomach Mucosa	stomach
24	chr18:9073600-9074200	Enhancers	Primary B cells from peripheral blood	blood
25	chr18:9073600-9074200	Enhancers	Primary hematopoietic stem cells short term culture	blood
26	chr18:9073600-9074200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
27	chr18:9073600-9074200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr18:9073600-9074200	Enhancers	Duodenum Mucosa	Duodenum
29	chr18:9073600-9074200	Flanking Active TSS	Fetal Lung	lung
30	chr18:9073600-9074200	Active TSS	Stomach Smooth Muscle	stomach
31	chr18:9073600-9074200	Flanking Active TSS	GM12878-XiMat	blood
32	chr18:9073600-9074200	Enhancers	HSMM	muscle
33	chr18:9073600-9074200	Enhancers	HSMMtube	muscle
34	chr18:9073600-9074200	Enhancers	NH-A	brain
35	chr18:9073600-9074200	Enhancers	Osteobl	bone
36	chr18:9073600-9074600	Enhancers	HMEC	breast
37	chr18:9073800-9074000	Enhancers	ES-I3 Cell Line	embryonic stem cell
38	chr18:9073800-9074000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr18:9073800-9074000	Enhancers	HUES6 Cell Line	embryonic stem cell
40	chr18:9073800-9074000	Flanking Active TSS	Primary T cells fromperipheralblood	blood
41	chr18:9073800-9074000	Flanking Active TSS	Primary hematopoietic stem cells	blood
42	chr18:9073800-9074000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
43	chr18:9073800-9074000	Active TSS	Brain Anterior Caudate	brain
44	chr18:9073800-9074000	Enhancers	Fetal Muscle Leg	muscle
45	chr18:9073800-9074000	Enhancers	Fetal Stomach	stomach
46	chr18:9073800-9074000	Enhancers	Fetal Thymus	thymus
47	chr18:9073800-9074000	Enhancers	Thymus	Thymus
48	chr18:9073800-9074000	Flanking Active TSS	HepG2	liver
49	chr18:9073800-9074200	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
50	chr18:9073800-9074200	Enhancers	iPS-18 Cell Line	embryonic stem cell

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