Variant report

Variant	rs1784773
Chromosome Location	chr18:9076995-9076996
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr18:9075693..9077760-chr18:9134959..9136628,2	MCF-7	breast:
2	chr18:9068940..9073336-chr18:9073886..9077279,4	K562	blood:
3	chr18:9070965..9077648-chr18:9133458..9138143,9	MCF-7	breast:
4	chr18:9073263..9075396-chr18:9076515..9079059,3	K562	blood:

Variant related genes	Relation type
ENSG00000266053	Chromatin interaction
ENSG00000101745	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs1703820	1.00[CEU][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064883	chr18:8709670-9133224	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv916373	chr18:9026803-9592201	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	esv1832073	chr18:9048118-9094498	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:9066200-9077000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr18:9074000-9081600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr18:9074200-9077000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr18:9074200-9078200	Weak transcription	Placenta	Placenta
5	chr18:9074200-9078800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr18:9074200-9078800	Weak transcription	Brain Cingulate Gyrus	brain
7	chr18:9074200-9079400	Weak transcription	Brain Hippocampus Middle	brain
8	chr18:9074200-9079400	Weak transcription	HepG2	liver
9	chr18:9074200-9079800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr18:9074200-9079800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr18:9074200-9079800	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr18:9074200-9080200	Weak transcription	Primary hematopoietic stem cells	blood
13	chr18:9074200-9080200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr18:9074200-9081600	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr18:9074200-9082000	Weak transcription	Adipose Nuclei	Adipose
16	chr18:9074200-9082400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr18:9074200-9083000	Weak transcription	Duodenum Mucosa	Duodenum
18	chr18:9074600-9079800	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr18:9074600-9080000	Weak transcription	A549	lung
20	chr18:9075600-9080000	Weak transcription	GM12878-XiMat	blood
21	chr18:9076800-9077400	Enhancers	K562	blood

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