Variant report

Variant	rs17038294
Chromosome Location	chr4:160405305-160405306
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11930767	1.00[MEX][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17038050	1.00[MEX][hapmap]
rs2251646	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2707702	0.83[AFR][1000 genomes]
rs60517599	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015469	chr4:160389277-160841619	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537316	chr4:160389277-160841619	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160402600-160405400	Weak transcription	Fetal Heart	heart
2	chr4:160404400-160405400	Enhancers	HSMM	muscle
3	chr4:160404600-160406200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr4:160404800-160405600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr4:160404800-160405800	Enhancers	HSMMtube	muscle
6	chr4:160404800-160406000	Enhancers	NHEK	skin
7	chr4:160405000-160405800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
8	chr4:160405000-160407000	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr4:160405000-160408200	Weak transcription	Fetal Brain Female	brain
10	chr4:160405200-160405400	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr4:160405200-160405600	Enhancers	HMEC	breast
12	chr4:160405200-160405800	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr4:160405200-160406200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr4:160405200-160407000	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr4:160405200-160408800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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