Variant report

Variant	rs2251646
Chromosome Location	chr4:160420568-160420569
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11930767	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17038294	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60517599	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015469	chr4:160389277-160841619	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537316	chr4:160389277-160841619	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160414400-160430400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr4:160416400-160421800	Enhancers	Liver	Liver
3	chr4:160417600-160424600	Weak transcription	HSMM	muscle
4	chr4:160418400-160422000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr4:160419800-160420600	Enhancers	Fetal Intestine Large	intestine
6	chr4:160419800-160420600	Enhancers	Fetal Intestine Small	intestine
7	chr4:160420000-160421200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr4:160420000-160423400	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr4:160420000-160423800	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr4:160420000-160423800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr4:160420200-160421200	Weak transcription	Fetal Brain Female	brain
12	chr4:160420200-160421600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr4:160420200-160424600	Weak transcription	Brain Germinal Matrix	brain
14	chr4:160420200-160425800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr4:160420200-160425800	Weak transcription	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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