Variant report

Variant	rs17038411
Chromosome Location	chr2:31333725-31333726
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17010725	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6710076	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7578162	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948552	chr2:31118599-31595424	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:31310600-31346800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr2:31320600-31337800	Weak transcription	Primary B cells from cord blood	blood
3	chr2:31328400-31335200	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr2:31329000-31336400	Weak transcription	Spleen	Spleen
5	chr2:31329200-31348200	Weak transcription	A549	lung
6	chr2:31330800-31334600	Enhancers	Fetal Muscle Leg	muscle
7	chr2:31331200-31336200	Weak transcription	Lung	lung
8	chr2:31332200-31336400	Weak transcription	Brain Germinal Matrix	brain
9	chr2:31332400-31347400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr2:31332600-31335000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr2:31332600-31335000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr2:31332600-31348600	Weak transcription	NHEK	skin
13	chr2:31332600-31348800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr2:31332600-31349000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr2:31332600-31349000	Weak transcription	HMEC	breast
16	chr2:31332800-31346600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr2:31333600-31333800	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr2:31333600-31334800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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