Variant report

Variant	rs6710076
Chromosome Location	chr2:31321472-31321473
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17010725	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17038411	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7578162	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948552	chr2:31118599-31595424	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:31302600-31325200	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr2:31307400-31331600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr2:31310600-31346800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr2:31320400-31321600	Enhancers	NHEK	skin
5	chr2:31320600-31337800	Weak transcription	Primary B cells from cord blood	blood
6	chr2:31321000-31321800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr2:31321000-31330800	Weak transcription	Psoas Muscle	Psoas
8	chr2:31321400-31321600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr2:31321400-31332000	Weak transcription	Pancreatic Islets	Pancreatic Islet

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links