The 2.0 version of rSNPBase

Variant report

Variant rs17039525
Chromosome Location chr2:53955513-53955514
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:110 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:53898000-53957400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
2 chr2:53908600-53982200 Weak transcription Small Intestine intestine
3 chr2:53910000-53994000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
4 chr2:53910200-53990600 Weak transcription Primary T killer memory cells from peripheral blood blood
5 chr2:53918400-53994000 Weak transcription Fetal Heart heart
6 chr2:53925400-53979400 Weak transcription Psoas Muscle Psoas
7 chr2:53927600-53960200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
8 chr2:53936600-53968400 Weak transcription Pancreas Pancrea
9 chr2:53936600-53978600 Weak transcription Hela-S3 cervix
10 chr2:53936800-53985400 Weak transcription Stomach Smooth Muscle stomach
11 chr2:53937000-53983800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
12 chr2:53937000-53994400 Weak transcription Placenta Amnion Placenta Amnion
13 chr2:53937200-53955800 Weak transcription Brain Substantia Nigra brain
14 chr2:53937200-53961400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
15 chr2:53937200-53964400 Weak transcription Aorta Aorta
16 chr2:53937200-53966800 Weak transcription Gastric stomach
17 chr2:53937200-53978600 Weak transcription NH-A brain
18 chr2:53937200-53983600 Weak transcription Right Ventricle heart
19 chr2:53937200-53994200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
20 chr2:53937400-53964000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
21 chr2:53937400-53979600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
22 chr2:53937400-53990200 Weak transcription Primary T helper naive cells from peripheral blood blood
23 chr2:53937400-53994400 Weak transcription Primary T killer naive cells fromperipheralblood blood
24 chr2:53937600-53961600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
25 chr2:53937800-53957000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
26 chr2:53938000-53956400 Weak transcription Skeletal Muscle Female skeletal muscle
27 chr2:53938000-53961400 Weak transcription NHEK skin
28 chr2:53938000-53974800 Weak transcription H1 Cell Line embryonic stem cell
29 chr2:53938000-53974800 Weak transcription Placenta Placenta
30 chr2:53938200-53967000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
31 chr2:53938200-53975200 Weak transcription Duodenum Mucosa Duodenum
32 chr2:53938400-53963600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
33 chr2:53938400-53969400 Weak transcription Rectal Smooth Muscle rectum
34 chr2:53938400-53969600 Weak transcription Esophagus oesophagus
35 chr2:53938400-53975000 Weak transcription Fetal Kidney kidney
36 chr2:53938400-53982800 Weak transcription HUES48 Cell Line embryonic stem cell
37 chr2:53938400-53983400 Weak transcription HSMMtube muscle
38 chr2:53938400-53992400 Weak transcription K562 blood
39 chr2:53938600-53961000 Weak transcription HUES6 Cell Line embryonic stem cell
40 chr2:53938600-53972000 Weak transcription HSMM muscle
41 chr2:53940600-53957400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
42 chr2:53941600-53956400 Weak transcription GM12878-XiMat blood
43 chr2:53941800-53956400 Weak transcription Brain Angular Gyrus brain
44 chr2:53941800-53957400 Weak transcription Liver Liver
45 chr2:53941800-53974400 Weak transcription iPS-20b Cell Line embryonic stem cell
46 chr2:53941800-53976400 Weak transcription Colon Smooth Muscle Colon
47 chr2:53943800-53960600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
48 chr2:53943800-53974800 Weak transcription Rectal Mucosa Donor 29 rectum
49 chr2:53943800-53983600 Weak transcription Ovary ovary
50 chr2:53943800-53983600 Weak transcription Thymus Thymus

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Last update: Aug 31, 2015